Variant report

Variant	rs67260667
Chromosome Location	chr17:67499957-67499958
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr17:67499867-67500291	GM12878	blood:	n/a	n/a
2	NFATC1	chr17:67499764-67500348	GM12878	blood:	n/a	n/a
3	BCL11A	chr17:67499814-67500359	GM12878	blood:	n/a	n/a
4	EP300	chr17:67499833-67500300	GM12878	blood:	n/a	n/a
5	MAZ	chr17:67499946-67500324	GM12878	blood:	n/a	n/a
6	CHD1	chr17:67499233-67500179	GM12878	blood:	n/a	n/a
7	STAT5A	chr17:67499848-67500288	GM12878	blood:	n/a	n/a
8	NFIC	chr17:67499553-67500408	GM12878	blood:	n/a	n/a
9	IRF4	chr17:67499758-67500346	GM12878	blood:	n/a	n/a
10	TCF3	chr17:67499945-67500267	GM12878	blood:	n/a	n/a
11	FOXM1	chr17:67499809-67500485	GM12878	blood:	n/a	n/a
12	MTA3	chr17:67499183-67500405	GM12878	blood:	n/a	n/a
13	EBF1	chr17:67499930-67500264	GM12878	blood:	n/a	n/a
14	IKZF1	chr17:67499411-67500336	GM12878	blood:	n/a	n/a
15	CHD2	chr17:67499853-67500293	GM12878	blood:	n/a	n/a
16	RUNX3	chr17:67499811-67500366	GM12878	blood:	n/a	n/a
17	TBP	chr17:67499884-67500274	GM12878	blood:	n/a	n/a
18	BATF	chr17:67499801-67500393	GM12878	blood:	n/a	chr17:67499851-67499860
19	BHLHE40	chr17:67499859-67500379	GM12878	blood:	n/a	n/a
20	USF2	chr17:67499950-67500232	GM12878	blood:	n/a	n/a
21	BCLAF1	chr17:67499812-67500368	GM12878	blood:	n/a	n/a
22	MXI1	chr17:67499920-67500350	GM12878	blood:	n/a	n/a
23	RUNX3	chr17:67499776-67500332	GM12878	blood:	n/a	n/a
24	SPI1	chr17:67499872-67500185	GM12891	blood:	n/a	n/a
25	JUND	chr17:67499623-67500415	GM12878	blood:	n/a	chr17:67499778-67499787
26	BCL11A	chr17:67499888-67500251	GM12878	blood:	n/a	n/a
27	ZNF143	chr17:67499890-67500086	GM12878	blood:	n/a	n/a
28	EP300	chr17:67499675-67500379	GM12878	blood:	n/a	n/a
29	SP1	chr17:67499871-67500285	GM12878	blood:	n/a	n/a
30	RCOR1	chr17:67499631-67500252	GM12878	blood:	n/a	n/a
31	EP300	chr17:67499923-67500162	GM12878	blood:	n/a	n/a
32	ATF2	chr17:67499764-67500341	GM12878	blood:	n/a	n/a
33	STAT3	chr17:67499659-67500333	GM12878	blood:	n/a	chr17:67499730-67499738
34	TBL1XR1	chr17:67499769-67500302	GM12878	blood:	n/a	n/a
35	NFATC1	chr17:67499752-67500412	GM12878	blood:	n/a	n/a
36	FOXM1	chr17:67499746-67500403	GM12878	blood:	n/a	n/a
37	PAX5	chr17:67499811-67500387	GM12878	blood:	n/a	n/a
38	TCF12	chr17:67499876-67500279	GM12878	blood:	n/a	n/a
39	POU2F2	chr17:67499942-67500264	GM12891	blood:	n/a	n/a
40	NFIC	chr17:67499553-67500433	GM12878	blood:	n/a	n/a
41	MEF2A	chr17:67499784-67500399	GM12878	blood:	n/a	n/a
42	BATF	chr17:67499834-67500363	GM12878	blood:	n/a	chr17:67499851-67499860
43	ZNF384	chr17:67499648-67500085	GM12878	blood:	n/a	n/a
44	EP300	chr17:67499886-67500315	GM12878	blood:	n/a	n/a
45	CUX1	chr17:67499887-67500378	GM12878	blood:	n/a	n/a
46	MAX	chr17:67499951-67500123	GM12878	blood:	n/a	n/a
47	MEF2C	chr17:67499762-67500302	GM12878	blood:	n/a	n/a
48	MEF2A	chr17:67499769-67500329	GM12878	blood:	n/a	n/a
49	TCF12	chr17:67499908-67500318	GM12878	blood:	n/a	n/a
50	PML	chr17:67499694-67500429	GM12878	blood:	n/a	chr17:67499695-67499703

Variant related genes	Relation type
ENSG00000267653	TF binding region
MAP2K6	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12948059	0.97[ASN][1000 genomes]
rs16974063	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16974102	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57439413	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57473471	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs58357732	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs60663624	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs66517015	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs66963653	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs67361810	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs67953371	0.96[ASN][1000 genomes]
rs72850506	0.97[ASN][1000 genomes]
rs73363653	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73363661	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73363663	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67450200-67512600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr17:67485000-67501800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr17:67494600-67522800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr17:67495000-67522600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr17:67497200-67500400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr17:67497600-67500000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr17:67497600-67511800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr17:67497600-67530200	Weak transcription	Gastric	stomach
9	chr17:67497800-67500200	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr17:67497800-67501800	Enhancers	Primary B cells from peripheral blood	blood
11	chr17:67498000-67513200	Weak transcription	Lung	lung
12	chr17:67498400-67513200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr17:67498400-67513200	Weak transcription	Spleen	Spleen
14	chr17:67498600-67502000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr17:67498600-67513000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr17:67498600-67513800	Weak transcription	Fetal Thymus	thymus
17	chr17:67498600-67515400	Weak transcription	Left Ventricle	heart
18	chr17:67498600-67515400	Weak transcription	Ovary	ovary
19	chr17:67498600-67519600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr17:67498600-67523000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr17:67498600-67535600	Weak transcription	Stomach Mucosa	stomach
22	chr17:67498600-67538800	Weak transcription	Right Ventricle	heart
23	chr17:67498800-67500200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr17:67498800-67500400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
25	chr17:67498800-67500400	Active TSS	Primary hematopoietic stem cells	blood
26	chr17:67498800-67502000	Weak transcription	Fetal Muscle Trunk	muscle
27	chr17:67498800-67515400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr17:67498800-67517000	Weak transcription	Fetal Kidney	kidney
29	chr17:67499000-67501400	Weak transcription	Primary T cells from cord blood	blood
30	chr17:67499000-67501800	Weak transcription	Fetal Muscle Leg	muscle
31	chr17:67499000-67502000	Weak transcription	Fetal Intestine Large	intestine
32	chr17:67499000-67502000	Weak transcription	Thymus	Thymus
33	chr17:67499000-67502200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr17:67499000-67505800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr17:67499000-67506000	Weak transcription	Fetal Intestine Small	intestine
36	chr17:67499000-67507200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr17:67499000-67513200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr17:67499000-67515400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr17:67499000-67519000	Weak transcription	Pancreas	Pancrea
40	chr17:67499000-67520000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr17:67499000-67521000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr17:67499000-67535000	Weak transcription	Fetal Brain Male	brain
43	chr17:67499000-67560200	Weak transcription	Fetal Brain Female	brain
44	chr17:67499200-67500200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
45	chr17:67499200-67500600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr17:67499200-67515200	Weak transcription	HepG2	liver
47	chr17:67499400-67500000	Weak transcription	Psoas Muscle	Psoas
48	chr17:67499400-67501000	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr17:67499400-67502600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr17:67499600-67500000	Enhancers	Skeletal Muscle Male	skeletal muscle

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