Variant report

Variant	rs575060
Chromosome Location	chr6:145586609-145586610
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145586529..145589505-chr6:145589669..145591827,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12111085	0.87[EUR][1000 genomes]
rs12189823	0.83[EUR][1000 genomes]
rs12190123	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12197178	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12206002	0.91[EUR][1000 genomes]
rs12206122	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12206346	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12525577	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12525591	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12527380	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13210377	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2038473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2038474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35112240	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35551962	0.91[EUR][1000 genomes]
rs474537	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs483603	0.83[ASN][1000 genomes]
rs505814	0.86[ASN][1000 genomes]
rs529364	0.83[ASN][1000 genomes]
rs557732	0.81[ASN][1000 genomes]
rs557970	0.81[ASN][1000 genomes]
rs560300	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs579734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs993701	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145579400-145593600	Weak transcription	Fetal Kidney	kidney
2	chr6:145584000-145586800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:145584200-145586800	Weak transcription	Fetal Intestine Large	intestine
4	chr6:145584200-145587000	Weak transcription	Fetal Intestine Small	intestine
5	chr6:145584200-145593200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:145585400-145587600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:145585600-145587400	Weak transcription	Fetal Brain Male	brain
8	chr6:145586000-145588000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:145586200-145587200	Enhancers	HepG2	liver
10	chr6:145586200-145588000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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