Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12111085	0.96[EUR][1000 genomes]
rs12189823	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12190123	0.91[EUR][1000 genomes]
rs12190534	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12197178	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12206122	0.91[EUR][1000 genomes]
rs12206346	0.91[EUR][1000 genomes]
rs12525577	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12525591	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12527380	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs13210377	0.91[EUR][1000 genomes]
rs2038473	0.91[EUR][1000 genomes]
rs2038474	0.91[EUR][1000 genomes]
rs35112240	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35551962	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs474537	0.91[EUR][1000 genomes]
rs560300	0.91[EUR][1000 genomes]
rs575060	0.91[EUR][1000 genomes]
rs579734	0.89[EUR][1000 genomes]
rs993701	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830834	chr6:145392073-145556294	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv886745	chr6:145494486-145554124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv970063	chr6:145538272-145539978	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145537000-145541400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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