Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:145535549..145536107-chr6:145954859..145955499,2	MCF-7	breast:
2	chr6:144906108..144907031-chr6:145535323..145536185,3	MCF-7	breast:
3	chr6:144905902..144906972-chr6:145534873..145536365,4	K562	blood:
4	chr6:144902620..144903603-chr6:145535345..145536293,3	K562	blood:
5	chr6:145458549..145459292-chr6:145535350..145535961,2	MCF-7	breast:
6	chr6:145349488..145350116-chr6:145535389..145536274,2	MCF-7	breast:
7	chr6:145396467..145397056-chr6:145535409..145536250,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12189823	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12190123	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12197178	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12206002	0.96[EUR][1000 genomes]
rs12206122	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12206346	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12525577	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12525591	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12527380	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13210377	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2038473	0.87[EUR][1000 genomes]
rs2038474	0.87[EUR][1000 genomes]
rs35112240	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35551962	0.96[EUR][1000 genomes]
rs474537	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs560300	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs563324	0.81[ASN][1000 genomes]
rs575060	0.87[EUR][1000 genomes]
rs579734	0.85[EUR][1000 genomes]
rs993701	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830834	chr6:145392073-145556294	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv886745	chr6:145494486-145554124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145535600-145536200	Enhancers	GM12878-XiMat	blood
2	chr6:145535600-145536600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:145535800-145536200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:145535800-145536200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:145535800-145536200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:145535800-145536200	Active TSS	Osteobl	bone
7	chr6:145535800-145536400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr6:145535800-145536400	Active TSS	Stomach Smooth Muscle	stomach

Quick Search: