Variant report

Variant	rs57580734
Chromosome Location	chr20:40832482-40832483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:40832139..40833790-chr20:55826009..55827611,2	MCF-7	breast:
2	chr20:40830590..40835735-chr20:55836914..55842550,8	MCF-7	breast:
3	chr20:40831244..40834063-chr3:64038786..64041412,2	MCF-7	breast:
4	chr20:40831007..40835987-chr20:46410949..46416142,17	MCF-7	breast:
5	chr20:40826931..40829939-chr20:40831326..40834321,4	MCF-7	breast:
6	chr17:56734756..56736837-chr20:40832402..40834079,2	MCF-7	breast:
7	chr20:40832441..40833429-chr20:55827388..55828311,2	MCF-7	breast:
8	chr20:40831668..40833369-chr20:52824566..52826162,2	MCF-7	breast:
9	chr20:40832079..40832639-chr20:41816078..41817042,2	K562	blood:
10	chr20:40829620..40834300-chr20:55837040..55842828,5	MCF-7	breast:
11	chr20:40831427..40833708-chr20:55817928..55819673,2	MCF-7	breast:
12	chr20:40821131..40823499-chr20:40831554..40834778,4	MCF-7	breast:
13	chr20:40831712..40835878-chr3:64095426..64100059,10	MCF-7	breast:
14	chr20:40831606..40834560-chr20:55819770..55821607,2	MCF-7	breast:
15	chr20:40832071..40835830-chr20:46413343..46416499,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000196562	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000101144	Chromatin interaction
ENSG00000101132	Chromatin interaction
ENSG00000226308	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs16986677	1.00[AMR][1000 genomes]
rs16986682	1.00[AMR][1000 genomes]
rs16986705	1.00[AMR][1000 genomes]
rs16986706	1.00[AMR][1000 genomes]
rs16986708	1.00[AMR][1000 genomes]
rs16986723	1.00[AMR][1000 genomes]
rs16986727	1.00[AMR][1000 genomes]
rs4525752	1.00[AMR][1000 genomes]
rs58705218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59448108	1.00[AMR][1000 genomes]
rs59848120	1.00[AMR][1000 genomes]
rs6093612	1.00[AMR][1000 genomes]
rs6093613	1.00[AMR][1000 genomes]
rs6093624	1.00[AMR][1000 genomes]
rs6102792	1.00[AMR][1000 genomes]
rs719665	1.00[AMR][1000 genomes]
rs73254735	1.00[AMR][1000 genomes]
rs73254747	1.00[AMR][1000 genomes]
rs73254757	1.00[AMR][1000 genomes]
rs73254768	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73254772	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73257070	1.00[AMR][1000 genomes]
rs73257084	1.00[AMR][1000 genomes]
rs73257090	1.00[AMR][1000 genomes]
rs73260991	1.00[AMR][1000 genomes]
rs73262915	1.00[AMR][1000 genomes]
rs73262920	1.00[AMR][1000 genomes]
rs73262921	1.00[AMR][1000 genomes]
rs73262922	1.00[AMR][1000 genomes]
rs73262924	1.00[AMR][1000 genomes]
rs73265788	1.00[AMR][1000 genomes]
rs73265792	1.00[AMR][1000 genomes]
rs73268829	1.00[AMR][1000 genomes]
rs73268834	1.00[AMR][1000 genomes]
rs73268861	1.00[AMR][1000 genomes]
rs73268862	1.00[AMR][1000 genomes]
rs73268867	1.00[AMR][1000 genomes]
rs73268883	1.00[AMR][1000 genomes]
rs73268888	1.00[AMR][1000 genomes]
rs73268890	1.00[AMR][1000 genomes]
rs73271012	1.00[AMR][1000 genomes]
rs73271014	1.00[AMR][1000 genomes]
rs73271018	1.00[AMR][1000 genomes]
rs73271025	1.00[AMR][1000 genomes]
rs73271032	1.00[AMR][1000 genomes]
rs73273121	1.00[AMR][1000 genomes]
rs73273135	1.00[AMR][1000 genomes]
rs73273154	1.00[AMR][1000 genomes]
rs73273406	1.00[AMR][1000 genomes]
rs73273411	1.00[AMR][1000 genomes]
rs985757	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40828000-40850400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:40828600-40833000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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