Variant report

Variant	rs73262915
Chromosome Location	chr20:40821458-40821459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:40820100..40822899-chr20:40823724..40826159,2	K562	blood:
2	chr20:40817829..40822981-chr20:46412840..46417309,8	MCF-7	breast:
3	chr20:40820340..40823978-chr20:40832975..40836310,5	MCF-7	breast:
4	chr20:40820436..40822965-chr20:55832782..55835561,2	MCF-7	breast:
5	chr20:40821131..40823499-chr20:40831554..40834778,4	MCF-7	breast:
6	chr20:40814293..40823247-chr20:55839406..55843117,11	MCF-7	breast:
7	chr20:40818601..40822972-chr20:55845195..55849784,5	MCF-7	breast:
8	chr20:40819411..40821827-chr3:64090120..64091647,2	MCF-7	breast:
9	chr20:40818040..40821638-chr3:64033448..64036264,3	MCF-7	breast:
10	chr20:40814621..40823038-chr20:55816699..55826328,24	MCF-7	breast:
11	chr20:40818180..40822172-chr20:40822774..40826315,5	MCF-7	breast:
12	chr20:40820217..40822683-chr20:52814569..52816751,2	MCF-7	breast:
13	chr20:40818651..40823257-chr20:40826391..40832084,7	MCF-7	breast:
14	chr20:40820666..40823074-chr20:49409824..49412239,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000101144	Chromatin interaction
ENSG00000196562	Chromatin interaction
ENSG00000226308	Chromatin interaction
ENSG00000124243	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs16986677	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16986682	1.00[AMR][1000 genomes]
rs16986705	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16986706	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16986708	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16986723	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16986727	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4525752	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57580734	1.00[AMR][1000 genomes]
rs58705218	1.00[AMR][1000 genomes]
rs59448108	1.00[AMR][1000 genomes]
rs59848120	1.00[AMR][1000 genomes]
rs6093612	1.00[AMR][1000 genomes]
rs6093613	1.00[AMR][1000 genomes]
rs6093624	1.00[AMR][1000 genomes]
rs6102792	1.00[AMR][1000 genomes]
rs719665	1.00[AMR][1000 genomes]
rs73254735	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73254747	1.00[AMR][1000 genomes]
rs73254757	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73254768	1.00[AMR][1000 genomes]
rs73254772	1.00[AMR][1000 genomes]
rs73257070	1.00[AMR][1000 genomes]
rs73257084	1.00[AMR][1000 genomes]
rs73257090	1.00[AMR][1000 genomes]
rs73260991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262920	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262921	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262922	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262924	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73265788	1.00[AMR][1000 genomes]
rs73265792	1.00[AMR][1000 genomes]
rs73268829	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268834	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268861	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268862	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268867	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268883	1.00[AMR][1000 genomes]
rs73268888	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268890	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271012	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271014	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271018	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271025	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271032	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273121	1.00[AMR][1000 genomes]
rs73273135	1.00[AMR][1000 genomes]
rs73273154	1.00[AMR][1000 genomes]
rs73273406	1.00[AMR][1000 genomes]
rs73273411	1.00[AMR][1000 genomes]
rs985757	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40819200-40822800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr20:40820200-40822200	Enhancers	Gastric	stomach
3	chr20:40820400-40822200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr20:40820400-40828200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr20:40821200-40821800	Enhancers	Pancreas	Pancrea

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