Variant report

Variant	rs73268834
Chromosome Location	chr20:40844247-40844248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs16986677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16986682	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16986705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16986706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16986708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16986723	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16986727	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4525752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57580734	1.00[AMR][1000 genomes]
rs58705218	1.00[AMR][1000 genomes]
rs59448108	1.00[AMR][1000 genomes]
rs59848120	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6093612	1.00[AMR][1000 genomes]
rs6093613	1.00[AMR][1000 genomes]
rs6093624	1.00[AMR][1000 genomes]
rs6102792	1.00[AMR][1000 genomes]
rs719665	1.00[AMR][1000 genomes]
rs73254735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73254747	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73254757	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73254768	1.00[AMR][1000 genomes]
rs73254772	1.00[AMR][1000 genomes]
rs73257070	1.00[AMR][1000 genomes]
rs73257084	1.00[AMR][1000 genomes]
rs73257090	1.00[AMR][1000 genomes]
rs73260991	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262915	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73265788	1.00[AMR][1000 genomes]
rs73265792	1.00[AMR][1000 genomes]
rs73268829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268883	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268888	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268890	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271012	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271014	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271018	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271025	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271032	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273121	1.00[AMR][1000 genomes]
rs73273135	1.00[AMR][1000 genomes]
rs73273154	1.00[AMR][1000 genomes]
rs73273406	1.00[AMR][1000 genomes]
rs73273411	1.00[AMR][1000 genomes]
rs985757	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv7918	chr20:40841650-40844386	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3454820	chr20:40841752-40844426	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3334328	chr20:40841867-40844345	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3454821	chr20:40841889-40844327	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3454822	chr20:40841903-40844326	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40828000-40850400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:40843200-40847000	Weak transcription	Fetal Brain Male	brain
3	chr20:40843200-40847200	Weak transcription	Fetal Brain Female	brain

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