Variant report

Variant	rs73268883
Chromosome Location	chr20:40860844-40860845
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:40855789..40858150-chr20:40858223..40861188,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs16986677	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16986682	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16986705	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16986706	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16986708	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16986723	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16986727	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4525752	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57580734	1.00[AMR][1000 genomes]
rs58705218	1.00[AMR][1000 genomes]
rs59448108	1.00[AMR][1000 genomes]
rs59848120	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6093612	1.00[AMR][1000 genomes]
rs6093613	1.00[AMR][1000 genomes]
rs6093624	1.00[AMR][1000 genomes]
rs6102792	1.00[AMR][1000 genomes]
rs719665	1.00[AMR][1000 genomes]
rs73254735	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73254747	1.00[AMR][1000 genomes]
rs73254757	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73254768	1.00[AMR][1000 genomes]
rs73254772	1.00[AMR][1000 genomes]
rs73257070	1.00[AMR][1000 genomes]
rs73257084	1.00[AMR][1000 genomes]
rs73257090	1.00[AMR][1000 genomes]
rs73260991	1.00[AMR][1000 genomes]
rs73262915	1.00[AMR][1000 genomes]
rs73262920	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262921	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262922	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262924	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73265788	1.00[AMR][1000 genomes]
rs73265792	1.00[AMR][1000 genomes]
rs73268829	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268834	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268861	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268862	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268867	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268888	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268890	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271012	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271014	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271018	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271025	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271032	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273121	1.00[AMR][1000 genomes]
rs73273135	1.00[AMR][1000 genomes]
rs73273154	1.00[AMR][1000 genomes]
rs73273406	1.00[AMR][1000 genomes]
rs73273411	1.00[AMR][1000 genomes]
rs985757	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40859800-40861800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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