Variant report

Variant	rs57581754
Chromosome Location	chr11:75798578-75798579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75796883..75799472-chr11:75836520..75838163,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56057576	1.00[AFR][1000 genomes]
rs56376662	0.92[AFR][1000 genomes]
rs58065536	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58586190	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58642366	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59466766	1.00[AMR][1000 genomes]
rs59587399	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7111896	1.00[AMR][1000 genomes]
rs7113608	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73496195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498221	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498250	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498258	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75744000-75803200	Weak transcription	Aorta	Aorta
2	chr11:75764400-75807400	Weak transcription	NHEK	skin
3	chr11:75771800-75827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:75778800-75801000	Weak transcription	Fetal Intestine Small	intestine
5	chr11:75779200-75799000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:75779400-75798800	Weak transcription	Placenta	Placenta
7	chr11:75779400-75801400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr11:75779400-75813600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:75779400-75827000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:75779600-75813800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:75779800-75826600	Weak transcription	Fetal Thymus	thymus
12	chr11:75780400-75801000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr11:75780400-75827000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:75781000-75801200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr11:75781400-75799000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:75785800-75827200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr11:75786800-75801000	Weak transcription	Fetal Stomach	stomach
18	chr11:75789000-75812000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr11:75789000-75827200	Weak transcription	Liver	Liver
20	chr11:75789200-75801000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:75789400-75801000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:75789400-75846400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr11:75791000-75801400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:75791200-75800800	Weak transcription	Primary hematopoietic stem cells	blood
25	chr11:75791200-75801000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr11:75791600-75800800	Weak transcription	GM12878-XiMat	blood
27	chr11:75792400-75807800	Weak transcription	Pancreas	Pancrea
28	chr11:75793800-75800000	Enhancers	Adipose Nuclei	Adipose
29	chr11:75794600-75800800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr11:75794800-75798800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr11:75794800-75803000	Weak transcription	Fetal Intestine Large	intestine
32	chr11:75795000-75830000	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr11:75795200-75798800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:75795200-75801000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:75795200-75807000	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr11:75795200-75807400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr11:75795200-75813800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:75795400-75813200	Weak transcription	HUVEC	blood vessel
39	chr11:75796200-75798800	Enhancers	NHLF	lung
40	chr11:75796200-75801000	Strong transcription	Primary B cells from peripheral blood	blood
41	chr11:75796400-75798600	Strong transcription	Primary T cells from cord blood	blood
42	chr11:75796400-75799000	Enhancers	NHDF-Ad	bronchial
43	chr11:75796600-75799000	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr11:75796600-75801200	Weak transcription	Fetal Lung	lung
45	chr11:75796800-75799000	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr11:75796800-75799400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:75797000-75798600	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr11:75797000-75799000	Enhancers	Ovary	ovary
49	chr11:75797200-75798800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:75797200-75798800	Enhancers	HSMMtube	muscle

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