Variant report

Variant	rs58642366
Chromosome Location	chr11:75818629-75818630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75817741..75819762-chr11:75822475..75824409,2	MCF-7	breast:
2	chr11:75808133..75810411-chr11:75817807..75820091,2	K562	blood:
3	chr11:75816598..75818635-chr11:75826470..75828373,2	MCF-7	breast:
4	chr11:75817536..75821071-chr11:75829941..75832993,4	MCF-7	breast:
5	chr11:75818203..75819720-chr11:75822712..75825166,2	K562	blood:
6	chr11:75808133..75811135-chr11:75817021..75820091,3	K562	blood:

Variant related genes	Relation type
ENSG00000198382	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56057576	0.95[AFR][1000 genomes]
rs56376662	0.87[AFR][1000 genomes]
rs57581754	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58065536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58586190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59466766	1.00[AMR][1000 genomes]
rs59587399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7111896	1.00[AMR][1000 genomes]
rs7113608	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73496195	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498221	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498258	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75771800-75827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:75779400-75827000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr11:75779800-75826600	Weak transcription	Fetal Thymus	thymus
4	chr11:75780400-75827000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:75785800-75827200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:75789000-75827200	Weak transcription	Liver	Liver
7	chr11:75789400-75846400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr11:75795000-75830000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr11:75797200-75820400	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:75798800-75827000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:75801200-75827000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:75801400-75826000	Weak transcription	Primary T cells from cord blood	blood
13	chr11:75801600-75826200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr11:75802000-75824200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr11:75802000-75826200	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr11:75802800-75834000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:75803400-75822200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr11:75808000-75827400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:75808400-75827000	Weak transcription	Placenta	Placenta
20	chr11:75810400-75818800	Weak transcription	Primary B cells from peripheral blood	blood
21	chr11:75812000-75826200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr11:75813600-75827000	Weak transcription	Spleen	Spleen
23	chr11:75814000-75819200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:75814000-75819200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:75814000-75825000	Weak transcription	K562	blood
26	chr11:75814000-75827000	Weak transcription	HUVEC	blood vessel
27	chr11:75814000-75830200	Weak transcription	Colon Smooth Muscle	Colon
28	chr11:75814200-75819200	Weak transcription	Fetal Stomach	stomach
29	chr11:75814200-75822400	Weak transcription	GM12878-XiMat	blood
30	chr11:75814200-75823000	Weak transcription	Fetal Muscle Leg	muscle
31	chr11:75814200-75823400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:75814200-75827000	Weak transcription	Left Ventricle	heart
33	chr11:75814200-75830200	Weak transcription	Right Ventricle	heart
34	chr11:75814400-75819000	Weak transcription	Adipose Nuclei	Adipose
35	chr11:75814400-75819600	Weak transcription	Brain Substantia Nigra	brain
36	chr11:75814400-75826400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:75814400-75826400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr11:75814400-75827000	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr11:75814400-75830800	Weak transcription	Ovary	ovary
40	chr11:75814400-75831000	Weak transcription	Fetal Heart	heart
41	chr11:75815800-75830400	Weak transcription	Fetal Brain Male	brain
42	chr11:75816000-75830800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:75816200-75819600	Weak transcription	Fetal Lung	lung
44	chr11:75817600-75821000	Strong transcription	Primary B cells from cord blood	blood
45	chr11:75818000-75819000	Enhancers	NHDF-Ad	bronchial
46	chr11:75818200-75818800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:75818200-75827000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:75818400-75819800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:75818400-75829800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr11:75818600-75827000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links