Variant report

Variant	rs56376662
Chromosome Location	chr11:75756407-75756408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56057576	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57581754	0.92[AFR][1000 genomes]
rs58065536	0.87[AFR][1000 genomes]
rs58586190	0.87[AFR][1000 genomes]
rs58642366	0.87[AFR][1000 genomes]
rs59525081	1.00[AMR][1000 genomes]
rs59587399	0.87[AFR][1000 genomes]
rs60273992	1.00[AMR][1000 genomes]
rs7113608	0.84[AFR][1000 genomes]
rs73493976	1.00[AMR][1000 genomes]
rs73496145	1.00[AMR][1000 genomes]
rs73496195	0.92[AFR][1000 genomes]
rs73498221	0.84[AFR][1000 genomes]
rs73498250	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75716800-75778200	Weak transcription	Ovary	ovary
2	chr11:75720000-75757600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:75728800-75757400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr11:75729000-75759600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:75729400-75758200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr11:75731200-75759800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr11:75731400-75758200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr11:75731400-75758400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:75731600-75771800	Weak transcription	Lung	lung
10	chr11:75731800-75759000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:75732200-75758200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr11:75732200-75771400	Weak transcription	Fetal Intestine Large	intestine
13	chr11:75732400-75757200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr11:75733000-75759800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:75733000-75762800	Weak transcription	HepG2	liver
16	chr11:75734600-75760000	Weak transcription	Thymus	Thymus
17	chr11:75736600-75771400	Weak transcription	Fetal Stomach	stomach
18	chr11:75736800-75777000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr11:75737000-75758200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr11:75740200-75776600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:75740200-75779000	Weak transcription	Fetal Muscle Leg	muscle
22	chr11:75740400-75757000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:75740400-75759200	Weak transcription	Fetal Intestine Small	intestine
24	chr11:75740400-75772600	Weak transcription	Liver	Liver
25	chr11:75741600-75758000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr11:75742400-75758000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr11:75742400-75759800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:75742400-75784800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:75742400-75785400	Weak transcription	Brain Angular Gyrus	brain
30	chr11:75743000-75784800	Weak transcription	Brain Substantia Nigra	brain
31	chr11:75744000-75758200	Weak transcription	Stomach Mucosa	stomach
32	chr11:75744000-75763000	Weak transcription	Gastric	stomach
33	chr11:75744000-75803200	Weak transcription	Aorta	Aorta
34	chr11:75746400-75758200	Weak transcription	Right Atrium	heart
35	chr11:75747200-75757200	Weak transcription	A549	lung
36	chr11:75748800-75757200	Weak transcription	NHDF-Ad	bronchial
37	chr11:75748800-75780800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:75748800-75794400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr11:75749000-75757200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:75749000-75759800	Weak transcription	Fetal Thymus	thymus
41	chr11:75750000-75757000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:75750200-75757000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr11:75750400-75757400	Weak transcription	HUVEC	blood vessel
44	chr11:75752000-75759200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:75754200-75758200	Weak transcription	Adipose Nuclei	Adipose
46	chr11:75754400-75756800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr11:75754600-75758800	Strong transcription	Primary B cells from cord blood	blood
48	chr11:75755000-75756800	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr11:75755000-75757400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr11:75755200-75759800	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links