Variant report

Variant	rs7113608
Chromosome Location	chr11:75804497-75804498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56057576	0.92[AFR][1000 genomes]
rs56376662	0.84[AFR][1000 genomes]
rs57581754	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58065536	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58586190	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58642366	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59466766	1.00[AMR][1000 genomes]
rs59587399	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7111896	1.00[AMR][1000 genomes]
rs73496195	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498221	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498250	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498258	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75764400-75807400	Weak transcription	NHEK	skin
2	chr11:75771800-75827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:75779400-75813600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:75779400-75827000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:75779600-75813800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:75779800-75826600	Weak transcription	Fetal Thymus	thymus
7	chr11:75780400-75827000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr11:75785800-75827200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr11:75789000-75812000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:75789000-75827200	Weak transcription	Liver	Liver
11	chr11:75789400-75846400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr11:75792400-75807800	Weak transcription	Pancreas	Pancrea
13	chr11:75795000-75830000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:75795200-75807000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:75795200-75807400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:75795200-75813800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:75795400-75813200	Weak transcription	HUVEC	blood vessel
18	chr11:75797200-75813400	Weak transcription	Psoas Muscle	Psoas
19	chr11:75797200-75820400	Weak transcription	Brain Hippocampus Middle	brain
20	chr11:75797400-75813400	Weak transcription	Brain Angular Gyrus	brain
21	chr11:75798400-75818000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:75798600-75806000	Weak transcription	Brain Anterior Caudate	brain
23	chr11:75798600-75813800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:75798800-75827000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:75799000-75807600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr11:75799200-75807000	Weak transcription	Placenta	Placenta
27	chr11:75799400-75817800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:75801200-75827000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:75801400-75813400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr11:75801400-75826000	Weak transcription	Primary T cells from cord blood	blood
31	chr11:75801600-75807000	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr11:75801600-75810200	Weak transcription	Fetal Intestine Small	intestine
33	chr11:75801600-75813400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr11:75801600-75815600	Weak transcription	Stomach Smooth Muscle	stomach
35	chr11:75801600-75826200	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr11:75802000-75824200	Weak transcription	Primary hematopoietic stem cells	blood
37	chr11:75802000-75826200	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr11:75802200-75807800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:75802200-75807800	Weak transcription	GM12878-XiMat	blood
40	chr11:75802400-75805800	Weak transcription	Primary B cells from peripheral blood	blood
41	chr11:75802400-75807000	Weak transcription	Primary B cells from cord blood	blood
42	chr11:75802600-75809600	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr11:75802800-75813600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:75802800-75834000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr11:75803000-75813400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:75803400-75822200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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