Variant report

Variant	rs57608318
Chromosome Location	chr6:34909281-34909282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34904349..34905899-chr6:34908056..34909609,2	MCF-7	breast:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11970238	0.87[ASN][1000 genomes]
rs12173920	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12175621	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12176092	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16894945	0.81[ASN][1000 genomes]
rs16894995	0.81[ASN][1000 genomes]
rs16895362	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16895467	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16896235	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2273007	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3734260	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3734263	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3756857	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3756858	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3800439	0.84[ASN][1000 genomes]
rs3800442	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3800447	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3800449	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3807051	0.90[ASN][1000 genomes]
rs4646923	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56825685	0.81[ASN][1000 genomes]
rs57338415	0.81[ASN][1000 genomes]
rs58764768	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58833137	0.81[ASN][1000 genomes]
rs60439875	0.81[ASN][1000 genomes]
rs60509690	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60815469	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6906552	0.81[ASN][1000 genomes]
rs73403805	0.84[ASN][1000 genomes]
rs73419643	0.82[ASN][1000 genomes]
rs73419650	0.81[ASN][1000 genomes]
rs73419656	0.81[ASN][1000 genomes]
rs73419658	0.81[ASN][1000 genomes]
rs73419660	0.81[ASN][1000 genomes]
rs73419689	0.81[ASN][1000 genomes]
rs73421513	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73421527	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73421528	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73421536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73421541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs847849	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348952	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9348954	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9348955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348956	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9348957	0.84[ASN][1000 genomes]
rs9357186	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9357189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9357191	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9366871	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9366873	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9368840	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9368842	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9368844	0.82[ASN][1000 genomes]
rs9380471	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9380472	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9380475	0.89[ASN][1000 genomes]
rs9380478	0.84[ASN][1000 genomes]
rs9394253	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9394257	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9394258	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9394259	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9394261	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9394262	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9394264	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9394265	0.87[ASN][1000 genomes]
rs9394267	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1026121	chr6:34786887-34961360	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv885797	chr6:34791027-34980601	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1033135	chr6:34802652-34957093	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv508402	chr6:34840961-34951288	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34877800-34921000	Weak transcription	Pancreas	Pancrea
2	chr6:34881200-34928200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:34886400-34923400	Weak transcription	Primary T cells from cord blood	blood
4	chr6:34889600-34923400	Weak transcription	Primary B cells from cord blood	blood
5	chr6:34895800-34949200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:34896000-34934600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:34896600-34910600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:34902400-34915200	Weak transcription	NHEK	skin
9	chr6:34902400-34915400	Weak transcription	HMEC	breast
10	chr6:34902600-34922400	Weak transcription	Brain Germinal Matrix	brain
11	chr6:34903000-34911200	Weak transcription	Fetal Thymus	thymus
12	chr6:34903200-34909400	Weak transcription	Psoas Muscle	Psoas
13	chr6:34903200-34910800	Weak transcription	Right Ventricle	heart
14	chr6:34903200-34921200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:34903200-34927800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:34903400-34923200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr6:34904600-34937400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:34905400-34917000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:34905400-34917000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:34906200-34911400	Weak transcription	Brain Hippocampus Middle	brain
21	chr6:34906200-34921000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr6:34907400-34922000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr6:34907400-34937600	Weak transcription	Dnd41	blood
24	chr6:34907600-34923200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr6:34907800-34909600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:34907800-34919600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr6:34907800-34921000	Weak transcription	Left Ventricle	heart
28	chr6:34907800-34922000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr6:34907800-34922400	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr6:34908200-34911400	Weak transcription	Ovary	ovary
31	chr6:34908200-34913200	Weak transcription	Liver	Liver
32	chr6:34908200-34918400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr6:34908200-34919200	Weak transcription	Fetal Intestine Small	intestine
34	chr6:34908400-34909800	Weak transcription	Fetal Heart	heart
35	chr6:34908400-34912400	Weak transcription	HepG2	liver
36	chr6:34908400-34921200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr6:34908600-34912800	Weak transcription	Fetal Intestine Large	intestine
38	chr6:34909000-34913000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr6:34909200-34910400	Enhancers	Right Atrium	heart

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