Variant report

Variant	rs9348954
Chromosome Location	chr6:34906891-34906892
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34891666..34893180-chr6:34904331..34907073,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11970238	0.80[ASN][1000 genomes]
rs12173920	0.89[CEU][hapmap];0.89[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];0.85[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12175621	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12176092	1.00[CEU][hapmap];0.89[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];0.85[TSI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1555107	0.80[CEU][hapmap]
rs16894102	0.83[CHB][hapmap]
rs16894945	0.83[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap]
rs16894995	0.83[CHB][hapmap]
rs16895362	1.00[CEU][hapmap];0.89[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];0.85[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16895467	1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16896235	0.85[CHB][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2273007	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2764199	0.95[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap]
rs3734260	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.85[TSI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3734262	0.80[CEU][hapmap]
rs3734263	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3756857	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3756858	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3798349	0.83[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap]
rs3800442	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3800447	0.89[CHB][hapmap];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3800449	1.00[CEU][hapmap];0.89[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];0.85[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3807051	0.83[ASN][1000 genomes]
rs4646923	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57608318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58764768	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60509690	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60815469	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6905468	0.80[CEU][hapmap]
rs6906552	0.87[ASN][1000 genomes]
rs6939345	0.83[CHB][hapmap]
rs73421513	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73421527	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73421528	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73421536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73421541	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs847849	0.80[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.80[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9348952	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9348955	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9348956	1.00[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9348957	0.89[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.88[JPT][hapmap]
rs9357186	1.00[CEU][hapmap];0.89[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];0.85[TSI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9357189	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9357191	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9366871	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9366873	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9368834	0.80[CEU][hapmap]
rs9368840	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9368842	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380471	1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9380472	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9380475	0.83[ASN][1000 genomes]
rs9394253	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9394257	1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9394258	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9394259	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9394261	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9394262	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9394264	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9394265	0.83[CHB][hapmap];0.95[CHD][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs9394267	0.83[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1026121	chr6:34786887-34961360	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv885797	chr6:34791027-34980601	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1033135	chr6:34802652-34957093	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv508402	chr6:34840961-34951288	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34872400-34907200	Weak transcription	Small Intestine	intestine
2	chr6:34877800-34921000	Weak transcription	Pancreas	Pancrea
3	chr6:34881200-34928200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:34886400-34923400	Weak transcription	Primary T cells from cord blood	blood
5	chr6:34889600-34923400	Weak transcription	Primary B cells from cord blood	blood
6	chr6:34894600-34907200	Weak transcription	HepG2	liver
7	chr6:34895000-34907400	Weak transcription	HSMMtube	muscle
8	chr6:34895800-34949200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:34896000-34934600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:34896200-34907200	Weak transcription	Fetal Intestine Small	intestine
11	chr6:34896600-34907400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:34896600-34910600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:34898200-34908000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:34901600-34907600	Enhancers	Fetal Heart	heart
15	chr6:34902200-34909000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr6:34902400-34915200	Weak transcription	NHEK	skin
17	chr6:34902400-34915400	Weak transcription	HMEC	breast
18	chr6:34902600-34922400	Weak transcription	Brain Germinal Matrix	brain
19	chr6:34903000-34907600	Weak transcription	Placenta	Placenta
20	chr6:34903000-34907600	Weak transcription	K562	blood
21	chr6:34903000-34907800	Weak transcription	Aorta	Aorta
22	chr6:34903000-34911200	Weak transcription	Fetal Thymus	thymus
23	chr6:34903200-34907000	Weak transcription	Fetal Intestine Large	intestine
24	chr6:34903200-34907800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr6:34903200-34909400	Weak transcription	Psoas Muscle	Psoas
26	chr6:34903200-34910800	Weak transcription	Right Ventricle	heart
27	chr6:34903200-34921200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:34903200-34927800	Weak transcription	Fetal Muscle Trunk	muscle
29	chr6:34903400-34907400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:34903400-34907600	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr6:34903400-34907600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:34903400-34907800	Weak transcription	Fetal Stomach	stomach
33	chr6:34903400-34908200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:34903400-34923200	Weak transcription	Primary B cells from peripheral blood	blood
35	chr6:34903600-34907400	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr6:34904600-34937400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:34905200-34908200	Enhancers	Liver	Liver
38	chr6:34905200-34908200	Enhancers	Ovary	ovary
39	chr6:34905400-34917000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:34905400-34917000	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr6:34905800-34907000	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr6:34905800-34907800	Enhancers	Left Ventricle	heart
43	chr6:34906200-34907600	Weak transcription	Stomach Mucosa	stomach
44	chr6:34906200-34907800	Enhancers	Right Atrium	heart
45	chr6:34906200-34911400	Weak transcription	Brain Hippocampus Middle	brain
46	chr6:34906200-34921000	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr6:34906400-34907000	Weak transcription	Lung	lung
48	chr6:34906600-34907200	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links