Variant report

Variant	rs57614926
Chromosome Location	chr4:103225989-103225990
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr4:103225836-103226065	HepG2	liver:	n/a	chr4:103225915-103225929 chr4:103225916-103225927 chr4:103225916-103225927 chr4:103225916-103225931

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103216889..103219644-chr4:103225928..103228584,2	K562	blood:

Variant related genes	Relation type
SLC39A8	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs28481751	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57016073	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57040664	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58142893	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58282159	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58546232	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61373170	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6815747	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72924893	1.00[EUR][1000 genomes]
rs72926296	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72926703	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72926707	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72926713	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72926715	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72926725	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72926726	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72926732	1.00[EUR][1000 genomes]
rs72926740	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72926745	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72928303	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72928311	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72928321	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72928331	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72928338	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72928340	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72928341	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72930217	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72930218	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7660242	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103181800-103230400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:103182000-103255400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr4:103186600-103229600	Weak transcription	Pancreas	Pancrea
4	chr4:103187200-103229400	Weak transcription	Fetal Thymus	thymus
5	chr4:103189800-103232400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:103196200-103242400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr4:103203600-103226400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:103204000-103228400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr4:103210400-103256800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr4:103212000-103226200	Weak transcription	Brain Hippocampus Middle	brain
11	chr4:103214800-103243200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr4:103216400-103229000	Strong transcription	Dnd41	blood
13	chr4:103217400-103228200	Weak transcription	HMEC	breast
14	chr4:103217600-103236600	Weak transcription	Liver	Liver
15	chr4:103218000-103242800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:103218200-103239800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr4:103218600-103245800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr4:103219000-103226000	Weak transcription	Placenta	Placenta
19	chr4:103219200-103242600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr4:103220400-103226400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr4:103220400-103229200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr4:103220600-103229200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr4:103220600-103233600	Weak transcription	Primary T cells from cord blood	blood
24	chr4:103220800-103228600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr4:103221200-103231000	Weak transcription	GM12878-XiMat	blood
26	chr4:103221200-103235600	Weak transcription	Lung	lung
27	chr4:103221200-103237400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr4:103221400-103226000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr4:103221400-103228400	Weak transcription	NHEK	skin
30	chr4:103221400-103229200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr4:103221400-103231200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr4:103221400-103239000	Weak transcription	Ovary	ovary
33	chr4:103221400-103242600	Weak transcription	K562	blood
34	chr4:103222200-103226000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr4:103222800-103227200	Strong transcription	Hela-S3	cervix
36	chr4:103223200-103227400	Strong transcription	Primary hematopoietic stem cells	blood
37	chr4:103224000-103233600	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr4:103224000-103263600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr4:103224400-103228600	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr4:103224400-103228800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr4:103224400-103239800	Weak transcription	Colonic Mucosa	Colon
42	chr4:103224600-103226600	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr4:103224600-103228400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr4:103224600-103228600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr4:103224800-103229400	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr4:103225000-103230800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr4:103225400-103227200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr4:103225400-103228200	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr4:103225600-103240200	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr4:103225800-103237800	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links