Variant report

Variant	rs72926726
Chromosome Location	chr4:103255555-103255556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:103239724..103242583-chr4:103255498..103257630,2	K562	blood:
2	chr4:103253788..103258099-chr4:103264060..103267151,4	K562	blood:
3	chr4:103255005..103257133-chr4:103259240..103261648,2	K562	blood:

Variant related genes	Relation type
ENSG00000138821	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs28481751	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57016073	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57040664	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57614926	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58142893	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58282159	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58546232	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61373170	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6815747	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72924893	1.00[EUR][1000 genomes]
rs72926296	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72926703	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72926707	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72926713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72926715	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72926725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72926732	1.00[EUR][1000 genomes]
rs72926740	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72926745	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72928303	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72928311	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72928321	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72928331	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72928338	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72928340	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72928341	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72930217	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72930218	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7660242	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103210400-103256800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr4:103224000-103263600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:103237400-103264000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:103239000-103256800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr4:103241200-103263600	Weak transcription	Liver	Liver
6	chr4:103241200-103263600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:103242600-103263400	Weak transcription	Lung	lung
8	chr4:103242800-103259600	Weak transcription	K562	blood
9	chr4:103243200-103256400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr4:103243400-103257000	Weak transcription	Dnd41	blood
11	chr4:103243400-103258600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:103243800-103256800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:103244000-103262000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr4:103244000-103262000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:103244600-103260200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr4:103245000-103257200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr4:103245000-103257400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr4:103249800-103260200	Weak transcription	Hela-S3	cervix
19	chr4:103250000-103260600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr4:103251800-103255800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr4:103252000-103261600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:103253000-103256400	Weak transcription	Primary T cells from cord blood	blood
23	chr4:103253600-103255800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr4:103254400-103256600	Strong transcription	Primary hematopoietic stem cells	blood
25	chr4:103255000-103256000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr4:103255000-103259600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr4:103255000-103264600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:103255200-103256000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr4:103255200-103259800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr4:103255400-103256800	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr4:103255400-103257800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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