Variant report

Variant	rs72924893
Chromosome Location	chr4:103230803-103230804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103229270..103230968-chr4:103234665..103237255,2	K562	blood:
2	chr4:103228415..103231285-chr4:103233015..103236394,4	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs28481751	1.00[EUR][1000 genomes]
rs57016073	1.00[EUR][1000 genomes]
rs57040664	1.00[EUR][1000 genomes]
rs57614926	1.00[EUR][1000 genomes]
rs58142893	1.00[EUR][1000 genomes]
rs58282159	1.00[EUR][1000 genomes]
rs58546232	1.00[EUR][1000 genomes]
rs61373170	1.00[EUR][1000 genomes]
rs6815747	1.00[EUR][1000 genomes]
rs72926296	1.00[EUR][1000 genomes]
rs72926703	1.00[EUR][1000 genomes]
rs72926707	1.00[EUR][1000 genomes]
rs72926713	1.00[EUR][1000 genomes]
rs72926715	1.00[EUR][1000 genomes]
rs72926725	1.00[EUR][1000 genomes]
rs72926726	1.00[EUR][1000 genomes]
rs72926732	1.00[EUR][1000 genomes]
rs72926740	1.00[EUR][1000 genomes]
rs72926745	1.00[EUR][1000 genomes]
rs72928303	1.00[EUR][1000 genomes]
rs72928311	1.00[EUR][1000 genomes]
rs72928321	1.00[EUR][1000 genomes]
rs72928331	1.00[EUR][1000 genomes]
rs72928338	1.00[EUR][1000 genomes]
rs72928340	1.00[EUR][1000 genomes]
rs72928341	1.00[EUR][1000 genomes]
rs72930217	1.00[EUR][1000 genomes]
rs72930218	1.00[EUR][1000 genomes]
rs7660242	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103182000-103255400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr4:103189800-103232400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:103196200-103242400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr4:103210400-103256800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr4:103214800-103243200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr4:103217600-103236600	Weak transcription	Liver	Liver
7	chr4:103218000-103242800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:103218200-103239800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:103218600-103245800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr4:103219200-103242600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr4:103220600-103233600	Weak transcription	Primary T cells from cord blood	blood
12	chr4:103221200-103231000	Weak transcription	GM12878-XiMat	blood
13	chr4:103221200-103235600	Weak transcription	Lung	lung
14	chr4:103221200-103237400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr4:103221400-103231200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:103221400-103239000	Weak transcription	Ovary	ovary
17	chr4:103221400-103242600	Weak transcription	K562	blood
18	chr4:103224000-103233600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr4:103224000-103263600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr4:103224400-103239800	Weak transcription	Colonic Mucosa	Colon
21	chr4:103225600-103240200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr4:103225800-103237800	Weak transcription	Primary B cells from cord blood	blood
23	chr4:103227400-103231000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr4:103228000-103242400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:103228200-103233800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr4:103228200-103242800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr4:103228400-103235400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr4:103228600-103239200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr4:103228600-103242600	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr4:103229000-103231200	Genic enhancers	Dnd41	blood
31	chr4:103229600-103239800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr4:103229600-103239800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr4:103229600-103240200	Weak transcription	Placenta	Placenta
34	chr4:103229800-103232000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr4:103229800-103234800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr4:103229800-103238600	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr4:103229800-103240600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr4:103230000-103231000	Weak transcription	Pancreas	Pancrea
39	chr4:103230000-103231200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr4:103230000-103232000	Weak transcription	Hela-S3	cervix
41	chr4:103230000-103232800	Weak transcription	A549	lung
42	chr4:103230000-103235000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr4:103230000-103242800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:103230000-103245800	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr4:103230400-103231200	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr4:103230400-103231800	Strong transcription	Rectal Mucosa Donor 31	rectum

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