Variant report

Variant	rs57615050
Chromosome Location	chr5:96425874-96425875
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs35222312	1.00[AMR][1000 genomes]
rs55997275	1.00[AMR][1000 genomes]
rs57831006	1.00[AMR][1000 genomes]
rs58760240	1.00[AMR][1000 genomes]
rs61601400	1.00[AMR][1000 genomes]
rs6556946	1.00[AMR][1000 genomes]
rs6556947	1.00[AMR][1000 genomes]
rs6556948	1.00[AMR][1000 genomes]
rs6867597	1.00[AMR][1000 genomes]
rs6885356	1.00[AMR][1000 genomes]
rs6886042	1.00[AMR][1000 genomes]
rs73775654	1.00[AMR][1000 genomes]
rs73775655	1.00[AMR][1000 genomes]
rs73775656	1.00[AMR][1000 genomes]
rs73775657	1.00[AMR][1000 genomes]
rs73775658	1.00[AMR][1000 genomes]
rs73775669	1.00[AMR][1000 genomes]
rs73775670	1.00[AMR][1000 genomes]
rs73779406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv4924	chr5:96391451-96437233	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv969966	chr5:96418895-96427787	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96422600-96426400	Strong transcription	Primary B cells from peripheral blood	blood
2	chr5:96423200-96430200	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:96424800-96427000	Flanking Active TSS	K562	blood
4	chr5:96425200-96426200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:96425200-96437000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:96425400-96426600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr5:96425400-96428200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:96425600-96430200	Weak transcription	Primary B cells from cord blood	blood
9	chr5:96425600-96430600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr5:96425800-96430600	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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