Variant report

Variant	rs73779407
Chromosome Location	chr5:96414948-96414949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:96413541..96415661-chr5:96445428..96448359,2	MCF-7	breast:
2	chr5:96405505..96407862-chr5:96413976..96415782,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs35222312	1.00[AMR][1000 genomes]
rs55997275	1.00[AMR][1000 genomes]
rs57615050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57831006	1.00[AMR][1000 genomes]
rs58760240	1.00[AMR][1000 genomes]
rs61601400	1.00[AMR][1000 genomes]
rs6556946	1.00[AMR][1000 genomes]
rs6556947	1.00[AMR][1000 genomes]
rs6556948	1.00[AMR][1000 genomes]
rs6867597	1.00[AMR][1000 genomes]
rs6885356	1.00[AMR][1000 genomes]
rs6886042	1.00[AMR][1000 genomes]
rs73775654	1.00[AMR][1000 genomes]
rs73775655	1.00[AMR][1000 genomes]
rs73775656	1.00[AMR][1000 genomes]
rs73775657	1.00[AMR][1000 genomes]
rs73775658	1.00[AMR][1000 genomes]
rs73775669	1.00[AMR][1000 genomes]
rs73775670	1.00[AMR][1000 genomes]
rs73779406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv4924	chr5:96391451-96437233	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96411400-96417600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:96414000-96416000	Enhancers	Primary B cells from cord blood	blood
3	chr5:96414200-96415600	Enhancers	Primary B cells from peripheral blood	blood
4	chr5:96414200-96415800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:96414200-96417400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr5:96414400-96415200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr5:96414400-96415600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:96414600-96415000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:96414600-96415200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr5:96414600-96415200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:96414600-96415200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:96414600-96415200	Enhancers	Osteobl	bone
13	chr5:96414600-96415400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:96414600-96415400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:96414600-96415400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr5:96414600-96415400	Enhancers	NHDF-Ad	bronchial
17	chr5:96414600-96415600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:96414600-96417000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr5:96414600-96421400	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr5:96414800-96415400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr5:96414800-96415400	Enhancers	GM12878-XiMat	blood

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