Variant report

Variant	rs5762873
Chromosome Location	chr22:29265512-29265513
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12627758	0.93[JPT][hapmap]
rs16986814	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2881637	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4823000	0.93[JPT][hapmap]
rs5752822	0.93[AFR][1000 genomes]
rs5752830	0.96[ASN][1000 genomes]
rs5752839	0.86[JPT][hapmap]
rs5752842	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs5752851	0.93[JPT][hapmap]
rs5762876	0.96[ASN][1000 genomes]
rs5762879	0.92[AFR][1000 genomes]
rs5762890	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5762891	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5762893	0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5762895	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5762900	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs5762906	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs5762907	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs5762919	0.85[CEU][hapmap];0.93[JPT][hapmap]
rs725281	0.93[JPT][hapmap]
rs7286026	1.00[CEU][hapmap]
rs7288513	0.85[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7290364	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs73388860	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8137589	1.00[CEU][hapmap]
rs8140640	0.93[JPT][hapmap]
rs9306461	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9625613	0.93[ASN][1000 genomes]
rs9625621	0.84[EUR][1000 genomes]
rs9625622	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9625628	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9625640	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9625641	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9625645	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9625647	0.89[ASN][1000 genomes]
rs9625657	1.00[CEU][hapmap]
rs974370	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv834169	chr22:29095446-29303929	Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv3589	chr22:29265164-29288935	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29261800-29265600	Weak transcription	Fetal Intestine Small	intestine
2	chr22:29265200-29266400	Enhancers	HepG2	liver
3	chr22:29265400-29266200	Enhancers	Liver	Liver

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