Variant report

Variant	rs7286026
Chromosome Location	chr22:29333861-29333862
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:29332231..29334141-chr22:29336540..29338393,2	K562	blood:
2	chr22:29326669..29328681-chr22:29332025..29335341,3	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10483153	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12628368	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs16986814	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs16986873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16986951	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16986993	0.88[ASN][1000 genomes]
rs1986295	0.88[ASN][1000 genomes]
rs2881637	0.87[EUR][1000 genomes]
rs41341948	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4820793	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4822999	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4823001	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4823004	0.88[ASN][1000 genomes]
rs5752820	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs5752830	0.83[EUR][1000 genomes]
rs5752839	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs5752842	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5762890	0.87[EUR][1000 genomes]
rs5762891	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs5762893	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs5762895	0.87[EUR][1000 genomes]
rs5762900	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs5762906	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs5762907	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs5762919	0.85[CEU][hapmap]
rs7288513	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs7290364	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73388860	0.87[EUR][1000 genomes]
rs8137589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9306461	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9625613	0.80[EUR][1000 genomes]
rs9625621	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9625622	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9625628	0.87[EUR][1000 genomes]
rs9625640	0.87[EUR][1000 genomes]
rs9625641	0.87[EUR][1000 genomes]
rs9625645	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9625657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29314400-29342800	Weak transcription	Brain Substantia Nigra	brain
2	chr22:29321000-29339600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr22:29322000-29336600	Weak transcription	NHEK	skin
4	chr22:29324000-29335400	Weak transcription	Colon Smooth Muscle	Colon
5	chr22:29325800-29334200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr22:29326600-29336000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr22:29328200-29335000	Weak transcription	Small Intestine	intestine
8	chr22:29328200-29338000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr22:29328800-29334400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr22:29329400-29334400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr22:29329400-29339000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr22:29329800-29338800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr22:29330200-29335200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr22:29330200-29335400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr22:29330200-29335400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr22:29330200-29335400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr22:29330200-29335400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr22:29330400-29335200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr22:29330400-29335600	Weak transcription	Fetal Lung	lung
20	chr22:29330400-29336400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr22:29330400-29336600	Weak transcription	A549	lung
22	chr22:29331000-29334800	Genic enhancers	HepG2	liver
23	chr22:29331200-29335600	Weak transcription	Liver	Liver
24	chr22:29331400-29334800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr22:29331400-29335000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr22:29331400-29338800	Weak transcription	Fetal Muscle Leg	muscle
27	chr22:29331400-29339200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr22:29331400-29339400	Weak transcription	Right Atrium	heart
29	chr22:29331400-29341000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr22:29331600-29336000	Weak transcription	Fetal Intestine Small	intestine
31	chr22:29331600-29339000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr22:29331600-29339200	Weak transcription	Pancreas	Pancrea
33	chr22:29331600-29339200	Weak transcription	Psoas Muscle	Psoas
34	chr22:29331800-29334400	Weak transcription	Fetal Intestine Large	intestine
35	chr22:29331800-29335400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr22:29332000-29343000	Weak transcription	Brain Angular Gyrus	brain
37	chr22:29332600-29334600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr22:29332600-29334800	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr22:29332600-29335000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr22:29332600-29335400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr22:29332600-29336000	Weak transcription	Ovary	ovary
42	chr22:29332600-29338200	Weak transcription	Brain Anterior Caudate	brain
43	chr22:29332600-29339600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr22:29332600-29347600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr22:29333000-29334400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr22:29333400-29334000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr22:29333400-29334000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr22:29333400-29338200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr22:29333600-29334800	Enhancers	HUVEC	blood vessel
50	chr22:29333600-29335400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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