Variant report

Variant	rs9625622
Chromosome Location	chr22:29274597-29274598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:29262040..29263818-chr22:29273723..29275867,2	K562	blood:
2	chr22:29273841..29275585-chr22:29663664..29665698,2	K562	blood:

Variant related genes	Relation type
ENSG00000182944	Chromatin interaction
ENSG00000100263	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs16986814	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2881637	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5752820	0.87[EUR][1000 genomes]
rs5752830	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5752839	0.85[EUR][1000 genomes]
rs5752842	1.00[CEU][hapmap]
rs5762873	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5762876	1.00[ASN][1000 genomes]
rs5762890	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5762891	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5762893	0.82[CEU][hapmap];0.90[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5762895	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5762900	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5762906	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs5762907	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs5762919	0.85[CEU][hapmap]
rs7286026	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7288513	0.85[CEU][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7290364	1.00[CEU][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73388860	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8137589	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9306461	1.00[CEU][hapmap];0.92[CHB][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625613	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9625621	1.00[EUR][1000 genomes]
rs9625628	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625640	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625641	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9625645	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9625647	0.89[ASN][1000 genomes]
rs9625657	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv834169	chr22:29095446-29303929	Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv3589	chr22:29265164-29288935	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29266200-29278400	Weak transcription	Fetal Intestine Small	intestine
2	chr22:29271200-29276000	Weak transcription	Fetal Muscle Leg	muscle
3	chr22:29271200-29276800	Weak transcription	HepG2	liver
4	chr22:29271400-29276000	Weak transcription	HSMMtube	muscle
5	chr22:29273600-29274800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr22:29274000-29278400	Weak transcription	Liver	Liver
7	chr22:29274200-29278400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr22:29274400-29275600	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links