Variant report

Variant	rs57636495
Chromosome Location	chr13:95203084-95203085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:95201752..95203295-chr13:95205384..95208174,2	MCF-7	breast:
2	chr13:95202114..95205197-chr13:95246302..95249578,3	K562	blood:
3	chr13:95200950..95203234-chr13:95251840..95253410,2	MCF-7	breast:
4	chr13:95201617..95204136-chr13:95207958..95210665,2	K562	blood:
5	chr13:95201512..95205109-chr13:95210516..95214213,3	MCF-7	breast:
6	chr13:95201188..95204136-chr13:95209165..95210804,2	K562	blood:

Variant related genes	Relation type
ENSG00000088451	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55871206	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57632412	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103973	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103975	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103976	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103994	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104403	1.00[AMR][1000 genomes]
rs74104412	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104414	1.00[AMR][1000 genomes]
rs74104415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv562756	chr13:95178317-95238154	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv832685	chr13:95179676-95279966	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95200400-95203200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:95201000-95203200	Active TSS	Brain Hippocampus Middle	brain
3	chr13:95201200-95203200	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr13:95201200-95203200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr13:95201800-95204400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:95202400-95203200	Flanking Active TSS	Hela-S3	cervix
7	chr13:95202400-95208800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr13:95202600-95205200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr13:95202600-95221400	Weak transcription	Gastric	stomach
10	chr13:95202800-95203200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr13:95202800-95203200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr13:95202800-95203400	Enhancers	HepG2	liver
13	chr13:95202800-95203800	Weak transcription	Placenta	Placenta
14	chr13:95202800-95204400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr13:95202800-95204400	Weak transcription	Osteobl	bone
16	chr13:95202800-95205000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr13:95202800-95208000	Weak transcription	Adipose Nuclei	Adipose
18	chr13:95202800-95208200	Weak transcription	Brain Germinal Matrix	brain
19	chr13:95202800-95210400	Weak transcription	Thymus	Thymus
20	chr13:95202800-95221400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr13:95202800-95222000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr13:95202800-95223600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr13:95203000-95203200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr13:95203000-95203200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr13:95203000-95203200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr13:95203000-95203200	Enhancers	Fetal Intestine Large	intestine
27	chr13:95203000-95203400	Enhancers	A549	lung
28	chr13:95203000-95221200	Weak transcription	Duodenum Mucosa	Duodenum
29	chr13:95203000-95221400	Weak transcription	Fetal Intestine Small	intestine
30	chr13:95203000-95222400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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