Variant report

Variant	rs74104415
Chromosome Location	chr13:95202627-95202628
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:95201752..95203295-chr13:95205384..95208174,2	MCF-7	breast:
2	chr13:95202114..95205197-chr13:95246302..95249578,3	K562	blood:
3	chr13:95200950..95203234-chr13:95251840..95253410,2	MCF-7	breast:
4	chr13:95200940..95202785-chr13:95248237..95249753,2	MCF-7	breast:
5	chr13:95189667..95191173-chr13:95200672..95202782,2	MCF-7	breast:
6	chr13:95201617..95204136-chr13:95207958..95210665,2	K562	blood:
7	chr13:95201512..95205109-chr13:95210516..95214213,3	MCF-7	breast:
8	chr13:95201188..95204136-chr13:95209165..95210804,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000088451	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55871206	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57632412	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57636495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103973	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103975	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103976	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103994	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104403	1.00[AMR][1000 genomes]
rs74104412	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104414	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv562756	chr13:95178317-95238154	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv832685	chr13:95179676-95279966	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95200400-95203000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:95200400-95203000	Active TSS	Fetal Kidney	kidney
3	chr13:95200400-95203000	Active TSS	Right Ventricle	heart
4	chr13:95200400-95203200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr13:95200600-95202800	Active TSS	Brain Cingulate Gyrus	brain
6	chr13:95200600-95203000	Active TSS	H9 Cell Line	embryonic stem cell
7	chr13:95200600-95203000	Active TSS	Fetal Brain Female	brain
8	chr13:95200600-95203000	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr13:95200800-95202800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr13:95200800-95202800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:95200800-95202800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr13:95200800-95202800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
13	chr13:95200800-95202800	Active TSS	Ovary	ovary
14	chr13:95200800-95202800	Active TSS	Psoas Muscle	Psoas
15	chr13:95200800-95203000	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr13:95201000-95202800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr13:95201000-95202800	Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr13:95201000-95202800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr13:95201000-95202800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr13:95201000-95202800	Active TSS	Primary T cells from cord blood	blood
21	chr13:95201000-95202800	Active TSS	Primary T killer memory cells from peripheral blood	blood
22	chr13:95201000-95202800	Active TSS	Brain Angular Gyrus	brain
23	chr13:95201000-95202800	Active TSS	Fetal Intestine Large	intestine
24	chr13:95201000-95202800	Active TSS	Left Ventricle	heart
25	chr13:95201000-95202800	Active TSS	Right Atrium	heart
26	chr13:95201000-95203000	Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr13:95201000-95203000	Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr13:95201000-95203000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr13:95201000-95203000	Active TSS	Brain Anterior Caudate	brain
30	chr13:95201000-95203200	Active TSS	Brain Hippocampus Middle	brain
31	chr13:95201200-95202800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr13:95201200-95202800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr13:95201200-95202800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
34	chr13:95201200-95202800	Active TSS	Brain Germinal Matrix	brain
35	chr13:95201200-95202800	Active TSS	Brain Inferior Temporal Lobe	brain
36	chr13:95201200-95202800	Active TSS	Brain Substantia Nigra	brain
37	chr13:95201200-95202800	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr13:95201200-95202800	Active TSS	Esophagus	oesophagus
39	chr13:95201200-95202800	Active TSS	HSMM	muscle
40	chr13:95201200-95202800	Active TSS	HSMMtube	muscle
41	chr13:95201200-95202800	Active TSS	NHLF	lung
42	chr13:95201200-95202800	Active TSS	Osteobl	bone
43	chr13:95201200-95203000	Active TSS	H1 Cell Line	embryonic stem cell
44	chr13:95201200-95203000	Active TSS	HUES48 Cell Line	embryonic stem cell
45	chr13:95201200-95203000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr13:95201200-95203200	Active TSS	HUES64 Cell Line	embryonic stem cell
47	chr13:95201200-95203200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
48	chr13:95201400-95202800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr13:95201400-95202800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
50	chr13:95201400-95202800	Active TSS	Rectal Mucosa Donor 31	rectum

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