Variant report

Variant	rs74104403
Chromosome Location	chr13:95188155-95188156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55871206	1.00[AMR][1000 genomes]
rs57632412	1.00[AMR][1000 genomes]
rs57636495	1.00[AMR][1000 genomes]
rs74103973	1.00[AMR][1000 genomes]
rs74103975	1.00[AMR][1000 genomes]
rs74103976	1.00[AMR][1000 genomes]
rs74103994	1.00[AMR][1000 genomes]
rs74104412	1.00[AMR][1000 genomes]
rs74104413	1.00[AMR][1000 genomes]
rs74104414	1.00[AMR][1000 genomes]
rs74104415	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv562756	chr13:95178317-95238154	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv832685	chr13:95179676-95279966	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95186800-95188200	Enhancers	Placenta	Placenta
2	chr13:95187000-95188200	Enhancers	Placenta Amnion	Placenta Amnion
3	chr13:95187400-95188600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr13:95187400-95188600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr13:95187400-95189600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr13:95187600-95188200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr13:95187600-95188600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr13:95187600-95188600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr13:95187600-95188600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr13:95187600-95188800	Enhancers	Primary T cells from cord blood	blood
11	chr13:95187600-95188800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr13:95187800-95188200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr13:95187800-95188200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr13:95187800-95188400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr13:95187800-95188400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr13:95187800-95188400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr13:95187800-95188600	Enhancers	Dnd41	blood
18	chr13:95188000-95188400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr13:95188000-95188400	Enhancers	Primary T cells fromperipheralblood	blood
20	chr13:95188000-95188600	Enhancers	H1 Cell Line	embryonic stem cell
21	chr13:95188000-95188600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr13:95188000-95188600	Enhancers	Fetal Thymus	thymus
23	chr13:95188000-95189200	Enhancers	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links