Variant report

Variant	rs74104413
Chromosome Location	chr13:95201691-95201692
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:95188685..95191659-chr13:95200343..95202520,3	K562	blood:
2	chr13:95200950..95203234-chr13:95251840..95253410,2	MCF-7	breast:
3	chr13:95201398..95202439-chr15:65596701..65597343,3	Hela-S3	cervix:
4	chr13:95201277..95201895-chr14:23475698..23476284,2	NB4	blood:
5	chr13:95200940..95202785-chr13:95248237..95249753,2	MCF-7	breast:
6	chr13:95201195..95202043-chr8:134584450..134585018,2	Hela-S3	cervix:
7	chr13:95201567..95202379-chr13:95248193..95248915,2	MCF-7	breast:
8	chr13:95189667..95191173-chr13:95200672..95202782,2	MCF-7	breast:
9	chr13:95201617..95204136-chr13:95207958..95210665,2	K562	blood:
10	chr13:95201215..95201873-chr8:67834925..67835805,2	NB4	blood:
11	chr13:95200681..95202256-chr13:95253004..95255314,2	K562	blood:
12	chr13:95201512..95205109-chr13:95210516..95214213,3	MCF-7	breast:
13	chr13:95200681..95202448-chr13:95253004..95255779,2	K562	blood:
14	chr13:95201188..95204136-chr13:95209165..95210804,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TGDS-1	chr13:95200354-95201818	NONHSAT034727

No data

Variant related genes	Relation type
ENSG00000088451	Chromatin interaction
ENSG00000200156	Chromatin interaction
ENSG00000152749	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55871206	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57632412	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57636495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103973	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103975	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103976	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103994	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104403	1.00[AMR][1000 genomes]
rs74104412	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104414	1.00[AMR][1000 genomes]
rs74104415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv562756	chr13:95178317-95238154	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv832685	chr13:95179676-95279966	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95200400-95201800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
2	chr13:95200400-95202200	Flanking Active TSS	Dnd41	blood
3	chr13:95200400-95202400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr13:95200400-95203000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:95200400-95203000	Active TSS	Fetal Kidney	kidney
6	chr13:95200400-95203000	Active TSS	Right Ventricle	heart
7	chr13:95200400-95203200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:95200600-95201800	Flanking Active TSS	Primary B cells from cord blood	blood
9	chr13:95200600-95201800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr13:95200600-95202000	Active TSS	Skeletal Muscle Female	skeletal muscle
11	chr13:95200600-95202400	Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr13:95200600-95202800	Active TSS	Brain Cingulate Gyrus	brain
13	chr13:95200600-95203000	Active TSS	H9 Cell Line	embryonic stem cell
14	chr13:95200600-95203000	Active TSS	Fetal Brain Female	brain
15	chr13:95200600-95203000	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr13:95200800-95201800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
17	chr13:95200800-95202400	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr13:95200800-95202600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:95200800-95202600	Active TSS	Aorta	Aorta
20	chr13:95200800-95202600	Active TSS	A549	lung
21	chr13:95200800-95202600	Active TSS	K562	blood
22	chr13:95200800-95202600	Active TSS	NHDF-Ad	bronchial
23	chr13:95200800-95202800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr13:95200800-95202800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr13:95200800-95202800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr13:95200800-95202800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
27	chr13:95200800-95202800	Active TSS	Ovary	ovary
28	chr13:95200800-95202800	Active TSS	Psoas Muscle	Psoas
29	chr13:95200800-95203000	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr13:95201000-95201800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr13:95201000-95202000	Active TSS	Rectal Mucosa Donor 29	rectum
32	chr13:95201000-95202200	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
33	chr13:95201000-95202200	Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr13:95201000-95202400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
35	chr13:95201000-95202400	Bivalent/Poised TSS	HepG2	liver
36	chr13:95201000-95202600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr13:95201000-95202600	Active TSS	iPS-18 Cell Line	embryonic stem cell
38	chr13:95201000-95202600	Active TSS	Muscle Satellite Cultured Cells	--
39	chr13:95201000-95202600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr13:95201000-95202600	Active TSS	Colon Smooth Muscle	Colon
41	chr13:95201000-95202600	Active TSS	Gastric	stomach
42	chr13:95201000-95202600	Active TSS	Lung	lung
43	chr13:95201000-95202600	Active TSS	Pancreas	Pancrea
44	chr13:95201000-95202600	Active TSS	Rectal Smooth Muscle	rectum
45	chr13:95201000-95202600	Active TSS	Sigmoid Colon	Sigmoid Colon
46	chr13:95201000-95202600	Active TSS	Small Intestine	intestine
47	chr13:95201000-95202600	Active TSS	Spleen	Spleen
48	chr13:95201000-95202800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
49	chr13:95201000-95202800	Active TSS	iPS-15b Cell Line	embryonic stem cell
50	chr13:95201000-95202800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell

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