Variant report

Variant	rs57682356
Chromosome Location	chr12:67764153-67764154
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:67762520..67764368-chr12:67764796..67766674,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1680	0.94[EUR][1000 genomes]
rs28785562	0.88[EUR][1000 genomes]
rs55718199	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs56009409	0.88[EUR][1000 genomes]
rs56044711	0.88[EUR][1000 genomes]
rs56256810	0.88[EUR][1000 genomes]
rs56956717	0.88[EUR][1000 genomes]
rs58181317	0.88[EUR][1000 genomes]
rs58398438	0.88[EUR][1000 genomes]
rs58559744	0.88[EUR][1000 genomes]
rs58577936	0.88[EUR][1000 genomes]
rs58982313	0.94[EUR][1000 genomes]
rs59402354	0.82[EUR][1000 genomes]
rs59826349	0.94[EUR][1000 genomes]
rs59842954	0.88[EUR][1000 genomes]
rs61237339	0.88[EUR][1000 genomes]
rs61371870	1.00[EUR][1000 genomes]
rs61539332	0.88[EUR][1000 genomes]
rs6581748	0.88[EUR][1000 genomes]
rs7134160	0.94[EUR][1000 genomes]
rs7300154	0.88[EUR][1000 genomes]
rs7301023	0.92[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7308079	0.94[EUR][1000 genomes]
rs7308322	0.88[EUR][1000 genomes]
rs7313387	1.00[EUR][1000 genomes]
rs73318892	0.88[EUR][1000 genomes]
rs73320730	0.88[EUR][1000 genomes]
rs73320788	0.88[EUR][1000 genomes]
rs73324517	0.88[EUR][1000 genomes]
rs73324577	1.00[EUR][1000 genomes]
rs74098702	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs74100307	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs74100308	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs74100320	0.92[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs74100321	0.92[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs74100325	0.94[EUR][1000 genomes]
rs74100337	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7953592	1.00[EUR][1000 genomes]
rs7960660	1.00[EUR][1000 genomes]
rs7968351	0.88[EUR][1000 genomes]
rs7974384	0.88[EUR][1000 genomes]
rs7977176	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67753400-67764400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr12:67760400-67764400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:67760600-67770200	Weak transcription	Psoas Muscle	Psoas
4	chr12:67760800-67764400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr12:67761000-67764200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr12:67761000-67764200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr12:67761000-67764600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr12:67762000-67771200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr12:67762000-67780600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr12:67762200-67764200	Weak transcription	HSMM	muscle
11	chr12:67762400-67765200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:67762400-67771200	Weak transcription	HSMMtube	muscle
13	chr12:67763400-67764800	Enhancers	Fetal Kidney	kidney
14	chr12:67763800-67765600	Enhancers	Osteobl	bone
15	chr12:67764000-67764600	Enhancers	Fetal Lung	lung
16	chr12:67764000-67765200	Enhancers	NHLF	lung
17	chr12:67764000-67765600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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