Variant report

Variant	rs7960660
Chromosome Location	chr12:67770705-67770706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:67749483..67750180-chr12:67770492..67771031,2	MCF-7	breast:
2	chr12:67770479..67771511-chr12:67808551..67809878,6	MCF-7	breast:
3	chr12:67757297..67760146-chr12:67769461..67771948,2	MCF-7	breast:
4	chr12:67662227..67664499-chr12:67769883..67772706,3	MCF-7	breast:
5	chr12:67768983..67772429-chr12:67779046..67781779,3	MCF-7	breast:
6	chr12:67765210..67767366-chr12:67768978..67770705,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111530	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1680	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28785562	0.88[EUR][1000 genomes]
rs55718199	0.94[EUR][1000 genomes]
rs56009409	0.88[EUR][1000 genomes]
rs56044711	0.88[EUR][1000 genomes]
rs56256810	0.88[EUR][1000 genomes]
rs56956717	0.88[EUR][1000 genomes]
rs57682356	1.00[EUR][1000 genomes]
rs58181317	0.88[EUR][1000 genomes]
rs58398438	0.88[EUR][1000 genomes]
rs58559744	0.88[EUR][1000 genomes]
rs58577936	0.88[EUR][1000 genomes]
rs58982313	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59402354	0.82[EUR][1000 genomes]
rs59826349	0.94[EUR][1000 genomes]
rs59842954	0.88[EUR][1000 genomes]
rs61237339	0.88[EUR][1000 genomes]
rs61371870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61539332	0.88[EUR][1000 genomes]
rs6581748	1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs7134160	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7300154	0.88[EUR][1000 genomes]
rs7301023	0.94[EUR][1000 genomes]
rs7308079	0.94[EUR][1000 genomes]
rs7308322	0.88[EUR][1000 genomes]
rs7313387	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73318892	0.88[EUR][1000 genomes]
rs73320730	0.88[EUR][1000 genomes]
rs73320788	0.88[EUR][1000 genomes]
rs73324517	0.88[EUR][1000 genomes]
rs73324577	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74098702	0.94[EUR][1000 genomes]
rs74100307	0.82[EUR][1000 genomes]
rs74100308	0.94[EUR][1000 genomes]
rs74100320	0.94[EUR][1000 genomes]
rs74100321	0.94[EUR][1000 genomes]
rs74100325	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74100337	0.94[EUR][1000 genomes]
rs7953592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7968351	1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs7974384	0.88[EUR][1000 genomes]
rs7977176	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67762000-67771200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:67762000-67780600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr12:67762400-67771200	Weak transcription	HSMMtube	muscle
4	chr12:67770400-67772200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:67770600-67772400	Enhancers	NHEK	skin

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