Variant report

Variant	rs57724551
Chromosome Location	chr19:39517715-39517716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10409280	0.84[ASN][1000 genomes]
rs10411234	0.84[ASN][1000 genomes]
rs12151099	0.81[ASN][1000 genomes]
rs12463075	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12609401	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12974080	0.83[ASN][1000 genomes]
rs12974708	0.84[ASN][1000 genomes]
rs12975482	0.85[ASN][1000 genomes]
rs12976100	0.84[ASN][1000 genomes]
rs12979968	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12981133	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12981826	0.85[EUR][1000 genomes]
rs12982067	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12983352	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12984833	0.83[ASN][1000 genomes]
rs12984836	0.83[ASN][1000 genomes]
rs13345897	0.81[ASN][1000 genomes]
rs1626050	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1627631	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1628376	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1628426	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1629253	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1651747	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16973058	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1864186	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1864188	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1869982	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2318897	0.81[ASN][1000 genomes]
rs34240661	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34366439	0.84[EUR][1000 genomes]
rs35000840	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35622111	0.85[ASN][1000 genomes]
rs35940388	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4381706	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4511651	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4802010	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs487356	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs516901	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs523890	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs523943	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs542464	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs553330	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs554932	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs561148	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs561329	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs572764	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57401831	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57588219	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs582575	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs582593	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs583529	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs583995	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs584806	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs584822	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs586107	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs586176	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59698424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs598468	0.84[ASN][1000 genomes]
rs599230	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs602899	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61553368	0.86[ASN][1000 genomes]
rs618068	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62119464	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62119508	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62119510	0.86[ASN][1000 genomes]
rs62121528	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62121529	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62121530	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62121531	0.87[ASN][1000 genomes]
rs62121532	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs662202	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs667911	0.81[EUR][1000 genomes]
rs678772	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs678848	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs679657	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs679732	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7246076	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs930100	0.86[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs57724551	FBXO27	cis	Artery Tibial	GTEx
rs57724551	FBXO27	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39487200-39518200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr19:39502400-39518000	Weak transcription	Aorta	Aorta
3	chr19:39503600-39520200	Weak transcription	Liver	Liver
4	chr19:39512400-39518000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr19:39513000-39521600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr19:39513000-39521600	Weak transcription	Right Atrium	heart
7	chr19:39514000-39521400	Weak transcription	Pancreas	Pancrea
8	chr19:39514000-39522200	Weak transcription	Gastric	stomach
9	chr19:39514200-39517800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr19:39514200-39517800	Weak transcription	Placenta	Placenta
11	chr19:39514400-39517800	Weak transcription	Brain Germinal Matrix	brain
12	chr19:39514400-39517800	Weak transcription	Left Ventricle	heart
13	chr19:39514400-39520400	Weak transcription	Fetal Intestine Large	intestine
14	chr19:39514400-39521600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr19:39514400-39521800	Weak transcription	Colon Smooth Muscle	Colon
16	chr19:39514600-39521400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr19:39514800-39518600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr19:39514800-39519600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr19:39514800-39520000	Strong transcription	Brain Cingulate Gyrus	brain
20	chr19:39515000-39518000	Strong transcription	Stomach Smooth Muscle	stomach
21	chr19:39515200-39521600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr19:39515400-39519000	Strong transcription	Brain Hippocampus Middle	brain
23	chr19:39515600-39517800	Strong transcription	Fetal Stomach	stomach
24	chr19:39515600-39518400	Strong transcription	Brain Inferior Temporal Lobe	brain
25	chr19:39515600-39518600	Strong transcription	Brain Substantia Nigra	brain
26	chr19:39515600-39518800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr19:39515800-39518000	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr19:39515800-39518400	Strong transcription	Adipose Nuclei	Adipose
29	chr19:39515800-39518600	Strong transcription	Ovary	ovary
30	chr19:39516000-39518200	Strong transcription	Brain Angular Gyrus	brain
31	chr19:39516200-39521000	Weak transcription	K562	blood
32	chr19:39516200-39521600	Weak transcription	Right Ventricle	heart
33	chr19:39516400-39518000	Weak transcription	Fetal Heart	heart
34	chr19:39516400-39522200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr19:39516600-39518400	ZNF genes & repeats	A549	lung
36	chr19:39516600-39518600	Strong transcription	Brain Anterior Caudate	brain
37	chr19:39516800-39517800	Strong transcription	H9 Cell Line	embryonic stem cell
38	chr19:39516800-39518400	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr19:39516800-39518600	ZNF genes & repeats	Fetal Intestine Small	intestine
40	chr19:39517000-39518000	Weak transcription	Esophagus	oesophagus
41	chr19:39517200-39517800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr19:39517400-39518000	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr19:39517400-39518000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr19:39517400-39518000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr19:39517400-39518400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr19:39517400-39518400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr19:39517400-39518400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr19:39517400-39518600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
49	chr19:39517400-39518600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr19:39517600-39518200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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