Variant report

Variant	rs667911
Chromosome Location	chr19:39487977-39487978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:39466848..39468476-chr19:39486869..39489506,3	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10409280	0.81[JPT][hapmap]
rs12463075	0.86[EUR][1000 genomes]
rs12609401	0.81[EUR][1000 genomes]
rs12979968	0.82[EUR][1000 genomes]
rs13313727	0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs1627631	0.80[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs1628376	0.81[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs1628426	0.86[CHB][hapmap]
rs1654335	0.83[ASN][1000 genomes]
rs1654336	0.81[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs1654337	0.83[ASN][1000 genomes]
rs1672656	0.82[ASN][1000 genomes]
rs1672657	0.81[ASN][1000 genomes]
rs1672658	0.83[ASN][1000 genomes]
rs1672659	0.83[ASN][1000 genomes]
rs16973058	0.81[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs17795157	0.85[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs4381706	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4511651	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs473604	0.83[ASN][1000 genomes]
rs4802010	0.83[EUR][1000 genomes]
rs482342	0.85[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs483359	0.81[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs498586	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs500660	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs500691	0.93[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs523943	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs555858	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55829324	0.83[ASN][1000 genomes]
rs56111444	0.83[ASN][1000 genomes]
rs564474	0.81[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs572764	0.80[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs57401831	0.83[EUR][1000 genomes]
rs57588219	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57724551	0.81[EUR][1000 genomes]
rs582575	0.81[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs582593	0.81[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs583529	0.81[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs583995	0.81[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs584806	0.81[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs586159	0.83[ASN][1000 genomes]
rs59698424	0.82[EUR][1000 genomes]
rs62119464	0.83[EUR][1000 genomes]
rs62121526	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62121528	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62121529	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62121530	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62121532	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs662202	0.80[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs678772	0.80[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs678885	0.85[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs681145	0.80[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs7246076	0.86[EUR][1000 genomes]
rs7248728	0.92[ASN][1000 genomes]
rs7249730	0.91[ASN][1000 genomes]
rs930100	0.81[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs667911	FBXO27	cis	Artery Tibial	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39480000-39503400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:39481000-39516000	Weak transcription	Brain Angular Gyrus	brain
3	chr19:39486800-39488200	Enhancers	GM12878-XiMat	blood
4	chr19:39487000-39488200	Weak transcription	HepG2	liver
5	chr19:39487200-39518200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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