Variant report

Variant	rs57588219
Chromosome Location	chr19:39492138-39492139
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12463075	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12609401	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12979968	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12982067	0.84[EUR][1000 genomes]
rs12983352	0.83[EUR][1000 genomes]
rs13313727	0.81[ASN][1000 genomes]
rs1654335	0.81[ASN][1000 genomes]
rs1654336	0.81[ASN][1000 genomes]
rs1654337	0.81[ASN][1000 genomes]
rs1672658	0.81[ASN][1000 genomes]
rs1672659	0.81[ASN][1000 genomes]
rs17795157	0.81[ASN][1000 genomes]
rs1869982	0.85[EUR][1000 genomes]
rs34240661	0.85[EUR][1000 genomes]
rs4381706	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4511651	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs473604	0.81[ASN][1000 genomes]
rs4802010	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs482342	0.81[ASN][1000 genomes]
rs483359	0.81[ASN][1000 genomes]
rs498586	0.83[ASN][1000 genomes]
rs500660	0.81[ASN][1000 genomes]
rs500691	0.83[ASN][1000 genomes]
rs555858	0.81[ASN][1000 genomes]
rs55829324	0.81[ASN][1000 genomes]
rs56111444	0.81[ASN][1000 genomes]
rs564474	0.80[ASN][1000 genomes]
rs57401831	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57724551	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs586159	0.81[ASN][1000 genomes]
rs59698424	0.95[AFR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62119464	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62119508	0.83[EUR][1000 genomes]
rs62121526	0.89[ASN][1000 genomes]
rs62121528	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62121529	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62121530	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62121532	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs667911	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs678885	0.81[ASN][1000 genomes]
rs681145	0.81[ASN][1000 genomes]
rs7246076	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7248728	0.90[ASN][1000 genomes]
rs7249730	0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs57588219	FBXO27	cis	Artery Tibial	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39480000-39503400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:39481000-39516000	Weak transcription	Brain Angular Gyrus	brain
3	chr19:39487200-39518200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr19:39492000-39497600	Weak transcription	Placenta	Placenta

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