Variant report

Variant	rs62121529
Chromosome Location	chr19:39498598-39498599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:39466032..39468066-chr19:39497935..39500825,2	K562	blood:
2	chr19:39495984..39498024-chr19:39498280..39501275,2	K562	blood:

Variant related genes	Relation type
ENSG00000269190	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12463075	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12609401	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12979968	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12982067	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12983352	0.86[EUR][1000 genomes]
rs1869982	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34240661	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4381706	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4511651	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4802010	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs561148	0.81[EUR][1000 genomes]
rs561329	0.81[EUR][1000 genomes]
rs57401831	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57588219	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57724551	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59698424	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62119464	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62119508	0.85[EUR][1000 genomes]
rs62121526	0.81[ASN][1000 genomes]
rs62121528	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62121530	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62121531	0.86[ASN][1000 genomes]
rs62121532	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs667911	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7246076	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7248728	0.82[ASN][1000 genomes]
rs7249730	0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62121529	FBXO27	cis	Artery Tibial	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39480000-39503400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:39481000-39516000	Weak transcription	Brain Angular Gyrus	brain
3	chr19:39487200-39518200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr19:39494600-39503400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr19:39496600-39504400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr19:39496600-39515800	Weak transcription	Ovary	ovary
7	chr19:39498000-39498600	Enhancers	GM12878-XiMat	blood
8	chr19:39498400-39516600	Weak transcription	A549	lung

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