Variant report

Variant	rs7248728
Chromosome Location	chr19:39485762-39485763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs13313727	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1654335	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1654336	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1654337	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1672656	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1672657	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1672658	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1672659	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17795157	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4381706	0.80[ASN][1000 genomes]
rs4511651	0.80[ASN][1000 genomes]
rs473604	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs482342	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs483359	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs498586	0.86[ASN][1000 genomes]
rs500660	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs500691	0.86[ASN][1000 genomes]
rs555858	0.84[ASN][1000 genomes]
rs55829324	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56111444	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs563627	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs564474	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57588219	0.90[ASN][1000 genomes]
rs586159	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62121526	0.93[ASN][1000 genomes]
rs62121529	0.82[ASN][1000 genomes]
rs62121530	0.85[ASN][1000 genomes]
rs637972	0.83[AFR][1000 genomes]
rs650027	0.86[AFR][1000 genomes]
rs667911	0.92[ASN][1000 genomes]
rs678885	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs681145	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7249710	0.82[AFR][1000 genomes]
rs7249730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7248728	FBXO27	cis	Esophagus Mucosa	GTEx
rs7248728	FBXO27	cis	Skin Sun Exposed Lower leg	GTEx
rs7248728	CTB-189B5.3	cis	Esophagus Mucosa	GTEx
rs7248728	CTB-189B5.3	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39480000-39503400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:39480200-39486600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr19:39481000-39516000	Weak transcription	Brain Angular Gyrus	brain
4	chr19:39484200-39486600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr19:39484400-39486800	Weak transcription	GM12878-XiMat	blood
6	chr19:39485200-39486200	Enhancers	Placenta	Placenta
7	chr19:39485400-39487000	Enhancers	HepG2	liver
8	chr19:39485400-39487600	Enhancers	HUVEC	blood vessel
9	chr19:39485600-39485800	Enhancers	Lung	lung

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