Variant report

Variant	rs57739138
Chromosome Location	chr4:81372160-81372161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10006753	1.00[ASN][1000 genomes]
rs11735139	1.00[ASN][1000 genomes]
rs11932944	1.00[ASN][1000 genomes]
rs11934491	1.00[ASN][1000 genomes]
rs11935940	1.00[ASN][1000 genomes]
rs11937422	1.00[ASN][1000 genomes]
rs11938301	1.00[ASN][1000 genomes]
rs11940522	1.00[ASN][1000 genomes]
rs1458036	1.00[ASN][1000 genomes]
rs1458037	1.00[ASN][1000 genomes]
rs1486017	1.00[ASN][1000 genomes]
rs1486020	1.00[ASN][1000 genomes]
rs1603242	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17004873	1.00[ASN][1000 genomes]
rs17004875	1.00[ASN][1000 genomes]
rs17004878	1.00[ASN][1000 genomes]
rs17004880	1.00[ASN][1000 genomes]
rs17004884	1.00[ASN][1000 genomes]
rs17004890	1.00[EUR][1000 genomes]
rs17004898	0.83[AFR][1000 genomes]
rs17004900	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17004904	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17004937	1.00[EUR][1000 genomes]
rs17004946	1.00[ASN][1000 genomes]
rs17004948	1.00[ASN][1000 genomes]
rs17004952	1.00[EUR][1000 genomes]
rs17004955	1.00[EUR][1000 genomes]
rs28455549	0.81[AFR][1000 genomes]
rs28565042	1.00[ASN][1000 genomes]
rs28869826	1.00[ASN][1000 genomes]
rs34576112	1.00[ASN][1000 genomes]
rs35166938	1.00[ASN][1000 genomes]
rs56165070	0.89[AFR][1000 genomes]
rs59661649	1.00[ASN][1000 genomes]
rs61429683	1.00[ASN][1000 genomes]
rs6821880	1.00[ASN][1000 genomes]
rs6844341	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6845203	0.87[AFR][1000 genomes]
rs6851197	1.00[ASN][1000 genomes]
rs6855968	0.90[AFR][1000 genomes]
rs72873853	1.00[ASN][1000 genomes]
rs72873868	1.00[ASN][1000 genomes]
rs72873869	1.00[ASN][1000 genomes]
rs72873874	1.00[ASN][1000 genomes]
rs73829288	0.89[AFR][1000 genomes]
rs73829289	0.89[AFR][1000 genomes]
rs73829290	0.83[AFR][1000 genomes]
rs7662417	1.00[ASN][1000 genomes]
rs7671275	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7677540	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7677943	1.00[EUR][1000 genomes]
rs7680532	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7690616	1.00[ASN][1000 genomes]
rs7694915	0.83[AFR][1000 genomes]
rs7698891	1.00[ASN][1000 genomes]
rs9942234	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81361600-81381000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:81367600-81375200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:81367800-81375200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:81370000-81375200	Weak transcription	Osteobl	bone
5	chr4:81370200-81375200	Weak transcription	NHDF-Ad	bronchial
6	chr4:81371600-81372600	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links