Variant report

Variant	rs73829290
Chromosome Location	chr4:81375462-81375463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1027396	0.90[EUR][1000 genomes]
rs1603242	0.86[AFR][1000 genomes]
rs17004895	0.90[EUR][1000 genomes]
rs17004898	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17004904	0.84[AFR][1000 genomes]
rs17004907	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2132263	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28455549	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56165070	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57739138	0.83[AFR][1000 genomes]
rs58168309	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60806961	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61027744	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6534958	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6813942	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6832497	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6845203	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6855184	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855968	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829280	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829281	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829288	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73829289	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829291	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7670615	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7671275	0.91[AFR][1000 genomes]
rs7677540	0.84[AFR][1000 genomes]
rs7680532	0.91[AFR][1000 genomes]
rs7694915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9685728	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9942234	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81361600-81381000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:81374800-81376200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:81374800-81376400	Enhancers	Placenta	Placenta
4	chr4:81375000-81376200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:81375000-81376200	Enhancers	HMEC	breast
6	chr4:81375000-81376400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:81375000-81376600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:81375000-81376600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr4:81375000-81376600	Enhancers	NHEK	skin
10	chr4:81375200-81375600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr4:81375200-81375600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:81375200-81375600	Enhancers	Osteobl	bone
13	chr4:81375200-81376000	Enhancers	Placenta Amnion	Placenta Amnion
14	chr4:81375200-81376000	Enhancers	NH-A	brain
15	chr4:81375200-81376200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr4:81375200-81376200	Enhancers	H9 Cell Line	embryonic stem cell
17	chr4:81375200-81376400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr4:81375200-81376400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr4:81375200-81376400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:81375200-81376600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr4:81375200-81376600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr4:81375400-81375600	Weak transcription	NHDF-Ad	bronchial
23	chr4:81375400-81376000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr4:81375400-81376200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:81375400-81376400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links