Variant report

Variant	rs60806961
Chromosome Location	chr4:81388876-81388877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1027396	0.90[EUR][1000 genomes]
rs1603242	0.80[AFR][1000 genomes]
rs17004895	0.90[EUR][1000 genomes]
rs17004898	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17004907	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2132263	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28455549	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56165070	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58168309	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61027744	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6534958	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6813942	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6832497	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6845203	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6855184	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855968	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829280	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829281	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829288	0.87[AMR][1000 genomes]
rs73829289	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829290	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73829291	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7670615	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7694915	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9685728	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81381400-81389200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:81382800-81392400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:81383400-81392000	Weak transcription	Fetal Kidney	kidney
4	chr4:81383800-81392000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:81383800-81392800	Weak transcription	Fetal Lung	lung
6	chr4:81384000-81391400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:81384000-81393000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:81384800-81392800	Weak transcription	Osteobl	bone
9	chr4:81386800-81392800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:81387000-81392800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:81387200-81390200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:81387200-81391000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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