Variant report

Variant	rs73829281
Chromosome Location	chr4:81341413-81341414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1027396	0.90[EUR][1000 genomes]
rs17004895	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17004898	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17004907	0.83[AMR][1000 genomes]
rs2132263	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28455549	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56165070	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58168309	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58686538	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60806961	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61027744	0.85[AMR][1000 genomes]
rs6534958	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6813942	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6832497	0.87[AMR][1000 genomes]
rs6845203	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855184	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6855968	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73829280	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73829288	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73829289	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73829290	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829291	0.87[AMR][1000 genomes]
rs7670615	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7689585	0.83[AFR][1000 genomes]
rs7694915	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9685728	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81335000-81343600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:81339000-81343600	Weak transcription	K562	blood
3	chr4:81340400-81341800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:81340600-81341800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:81340600-81342200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:81340800-81342000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:81340800-81342000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr4:81341200-81343800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr4:81341400-81342600	Enhancers	Stomach Mucosa	stomach

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