Variant report

Variant	rs73829289
Chromosome Location	chr4:81368124-81368125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1027396	0.90[EUR][1000 genomes]
rs17004895	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17004898	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17004907	0.85[AMR][1000 genomes]
rs2132263	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28455549	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56165070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57739138	0.89[AFR][1000 genomes]
rs58168309	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58686538	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60806961	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61027744	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6534958	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6813942	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6832497	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6845203	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855184	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6855968	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73829280	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73829281	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73829288	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73829290	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829291	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7670615	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7671275	0.82[AFR][1000 genomes]
rs7680532	0.82[AFR][1000 genomes]
rs7694915	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9307689	0.80[AMR][1000 genomes]
rs9685728	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81361600-81381000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:81367200-81370000	Enhancers	Osteobl	bone
3	chr4:81367600-81369000	Weak transcription	NHDF-Ad	bronchial
4	chr4:81367600-81375200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:81367800-81368800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:81367800-81369000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:81367800-81369000	Weak transcription	HMEC	breast
8	chr4:81367800-81375200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:81368000-81368200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:81368000-81369200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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