Variant report

Variant	rs6534958
Chromosome Location	chr4:81382908-81382909
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1027396	0.90[EUR][1000 genomes]
rs1603242	0.87[AFR][1000 genomes]
rs17004895	0.90[EUR][1000 genomes]
rs17004898	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17004904	0.91[AFR][1000 genomes]
rs17004907	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2132263	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28455549	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56165070	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58168309	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60806961	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61027744	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6813942	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6832497	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6845203	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6855184	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855968	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829280	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829281	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829288	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73829289	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73829290	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73829291	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7670615	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7671275	0.85[AFR][1000 genomes]
rs7677540	0.91[AFR][1000 genomes]
rs7680532	0.85[AFR][1000 genomes]
rs7694915	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9685728	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9942234	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81376200-81386400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:81380600-81383800	Weak transcription	Adipose Nuclei	Adipose
3	chr4:81380800-81383000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:81380800-81383600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:81380800-81383800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr4:81381000-81383800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:81381200-81383800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:81381400-81383200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr4:81381400-81389200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:81381600-81383800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr4:81381800-81383000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr4:81381800-81383600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr4:81382000-81383400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr4:81382000-81383800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr4:81382000-81384000	Enhancers	NHEK	skin
16	chr4:81382200-81383400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:81382200-81383400	Enhancers	HMEC	breast
18	chr4:81382200-81383600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:81382200-81384000	Enhancers	Placenta	Placenta
20	chr4:81382400-81383000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:81382400-81385600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr4:81382600-81383400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr4:81382600-81384000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:81382800-81383200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr4:81382800-81383400	Enhancers	Fetal Kidney	kidney
26	chr4:81382800-81384000	Enhancers	H1 Cell Line	embryonic stem cell
27	chr4:81382800-81392400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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