Variant report

Variant	rs1027396
Chromosome Location	chr4:81404374-81404375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17004895	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17004898	0.90[EUR][1000 genomes]
rs17004907	0.80[AMR][1000 genomes]
rs2132263	0.82[EUR][1000 genomes]
rs28455549	0.90[EUR][1000 genomes]
rs56165070	0.90[EUR][1000 genomes]
rs58168309	0.90[EUR][1000 genomes]
rs60806961	0.90[EUR][1000 genomes]
rs6534958	0.90[EUR][1000 genomes]
rs6813942	0.90[EUR][1000 genomes]
rs6845203	0.90[EUR][1000 genomes]
rs6855184	0.90[EUR][1000 genomes]
rs6855968	0.90[EUR][1000 genomes]
rs73829280	0.90[EUR][1000 genomes]
rs73829281	0.90[EUR][1000 genomes]
rs73829289	0.90[EUR][1000 genomes]
rs73829290	0.90[EUR][1000 genomes]
rs7670615	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7694915	0.90[EUR][1000 genomes]
rs9685728	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv528410	chr4:81402774-81411380	Weak transcription Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81397400-81406000	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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