Variant report
| Variant | rs17004907 |
|---|---|
| Chromosome Location | chr4:81400118-81400119 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1027396 | 0.80[AMR][1000 genomes] |
| rs1603242 | 0.80[AFR][1000 genomes] |
| rs17004898 | 0.85[AMR][1000 genomes] |
| rs2132263 | 0.91[AMR][1000 genomes] |
| rs28455549 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs56165070 | 0.85[AMR][1000 genomes] |
| rs58168309 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs58686538 | 0.89[AMR][1000 genomes] |
| rs60806961 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61027744 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6534958 | 0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6813942 | 0.83[AMR][1000 genomes] |
| rs6832497 | 0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6845203 | 0.85[AMR][1000 genomes] |
| rs6855184 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6855968 | 0.85[AMR][1000 genomes] |
| rs73829280 | 0.85[AMR][1000 genomes] |
| rs73829281 | 0.83[AMR][1000 genomes] |
| rs73829288 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs73829289 | 0.85[AMR][1000 genomes] |
| rs73829290 | 0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73829291 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7670615 | 0.87[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7694915 | 0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9685728 | 0.85[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999334 | chr4:81324288-81409040 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv537153 | chr4:81324288-81409040 | Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:81397400-81406000 | Weak transcription | Osteobl | bone |
