Variant report

Variant	rs578116429
Chromosome Location	chr19:21580833-21580834
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv3325271	chr19:21445407-21792817	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv911420	chr19:21454672-21613397	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv2751783	chr19:21465822-21726337	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	esv3363678	chr19:21483148-21756908	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv578952	chr19:21535707-21868584	Genic enhancers Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	esv1793996	chr19:21544242-21609607	Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv1801985	chr19:21544242-21609607	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv1844586	chr19:21544242-21609607	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	esv1834499	chr19:21557835-21609607	Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	esv1834993	chr19:21557835-21609607	Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv911421	chr19:21579718-21613397	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
15	nsv978789	chr19:21579953-21589286	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21578800-21581200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr19:21579000-21581600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr19:21579400-21581200	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr19:21579400-21581400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr19:21579600-21581000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr19:21579600-21581000	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr19:21579600-21581000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr19:21579600-21581000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr19:21579600-21581000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr19:21579600-21581000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr19:21579600-21581000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr19:21579600-21581000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr19:21579600-21581000	Active TSS	Aorta	Aorta
14	chr19:21579600-21581000	Active TSS	Brain Cingulate Gyrus	brain
15	chr19:21579600-21581000	Active TSS	Brain Hippocampus Middle	brain
16	chr19:21579600-21581000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr19:21579600-21581000	Active TSS	Brain Substantia Nigra	brain
18	chr19:21579600-21581000	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr19:21579600-21581000	Active TSS	Fetal Intestine Large	intestine
20	chr19:21579600-21581000	Active TSS	Fetal Muscle Trunk	muscle
21	chr19:21579600-21581000	Active TSS	HSMM	muscle
22	chr19:21579600-21581000	Active TSS	NH-A	brain
23	chr19:21579600-21581000	Active TSS	NHDF-Ad	bronchial
24	chr19:21579600-21581200	Active TSS	Brain Angular Gyrus	brain
25	chr19:21579600-21581200	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr19:21579600-21581200	Active TSS	Fetal Kidney	kidney
27	chr19:21579600-21581200	Active TSS	Ovary	ovary
28	chr19:21579600-21581400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr19:21579600-21581400	Active TSS	Colonic Mucosa	Colon
30	chr19:21579600-21581400	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr19:21579600-21581400	Active TSS	HSMMtube	muscle
32	chr19:21579600-21581400	Active TSS	K562	blood
33	chr19:21579600-21581600	Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr19:21579800-21581000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr19:21579800-21581000	Active TSS	Primary T helper naive cells from peripheral blood	blood
36	chr19:21579800-21581000	Active TSS	Pancreas	Pancrea
37	chr19:21579800-21581200	Active TSS	H1 Cell Line	embryonic stem cell
38	chr19:21579800-21581200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr19:21579800-21581200	Active TSS	H9 Cell Line	embryonic stem cell
40	chr19:21579800-21581200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr19:21579800-21581200	Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr19:21579800-21581200	Active TSS	Liver	Liver
43	chr19:21579800-21581200	Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr19:21579800-21581200	Active TSS	NHLF	lung
45	chr19:21579800-21581400	Active TSS	ES-I3 Cell Line	embryonic stem cell
46	chr19:21579800-21581400	Active TSS	iPS-15b Cell Line	embryonic stem cell
47	chr19:21579800-21581400	Active TSS	iPS-18 Cell Line	embryonic stem cell
48	chr19:21579800-21581400	Active TSS	HMEC	breast
49	chr19:21579800-21581600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr19:21579800-21581600	Active TSS	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links