Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12333116	0.93[ASN][1000 genomes]
rs1538792	0.85[ASN][1000 genomes]
rs1543778	0.85[ASN][1000 genomes]
rs17062456	1.00[ASN][1000 genomes]
rs17062569	0.93[ASN][1000 genomes]
rs2251865	0.85[ASN][1000 genomes]
rs2518199	0.93[ASN][1000 genomes]
rs2791830	0.93[ASN][1000 genomes]
rs2791831	0.93[ASN][1000 genomes]
rs2791836	0.93[ASN][1000 genomes]
rs34747916	0.93[ASN][1000 genomes]
rs56000471	1.00[ASN][1000 genomes]
rs56230248	1.00[ASN][1000 genomes]
rs60199869	0.93[ASN][1000 genomes]
rs6924758	1.00[ASN][1000 genomes]
rs73512746	0.93[ASN][1000 genomes]
rs73512772	0.93[ASN][1000 genomes]
rs73512776	0.93[ASN][1000 genomes]
rs73512781	0.93[ASN][1000 genomes]
rs73761411	1.00[ASN][1000 genomes]
rs73761412	1.00[ASN][1000 genomes]
rs73761417	1.00[ASN][1000 genomes]
rs7739324	1.00[ASN][1000 genomes]
rs7754697	0.93[ASN][1000 genomes]
rs7760050	1.00[ASN][1000 genomes]
rs7772328	0.80[ASN][1000 genomes]
rs9498692	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498712	0.93[ASN][1000 genomes]
rs9498714	0.93[ASN][1000 genomes]
rs9498715	0.93[ASN][1000 genomes]
rs9498719	0.93[ASN][1000 genomes]
rs9498721	0.93[ASN][1000 genomes]
rs9498725	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1819438	chr6:102211675-102279200	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102207400-102217800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:102209200-102217000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:102212800-102215800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:102213000-102215400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:102213000-102215400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:102213000-102216200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:102213400-102217400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:102214800-102224800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:102215000-102217600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:102215200-102217000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:102215200-102217000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:102215200-102217600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:102215200-102217600	Weak transcription	H1 Cell Line	embryonic stem cell

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