Variant report

Variant	rs57904662
Chromosome Location	chr10:97885990-97885991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CUX1	chr10:97885058-97886078	K562	blood:	n/a	n/a
2	TBL1XR1	chr10:97884069-97886025	K562	blood:	n/a	n/a
3	ZNF384	chr10:97885571-97886210	K562	blood:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97798897..97809644-chr10:97883865..97893202,24	K562	blood:
2	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:
3	chr10:97847401..97854280-chr10:97883753..97891876,34	MCF-7	breast:
4	chr10:97827771..97833919-chr10:97884626..97888548,7	K562	blood:
5	chr10:97859180..97860800-chr10:97885963..97887951,2	MCF-7	breast:
6	chr10:97823412..97829271-chr10:97885375..97892097,8	K562	blood:
7	chr10:97804129..97806997-chr10:97883987..97886731,5	K562	blood:
8	chr10:97875753..97878264-chr10:97885533..97887892,2	MCF-7	breast:
9	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
10	chr10:97801795..97805700-chr10:97884363..97887508,3	MCF-7	breast:

No data

Variant related genes	Relation type
ZNF518A	TF binding region
ENSG00000266407	Chromatin interaction
ENSG00000107443	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1360954	0.95[EUR][1000 genomes]
rs17111341	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17111359	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17111364	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56046295	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7081962	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7087254	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73320939	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7900016	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7902556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97884800-97889000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:97884800-97889000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr10:97884800-97889000	Weak transcription	HMEC	breast
4	chr10:97884800-97889200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:97884800-97889200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:97884800-97889200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:97884800-97889200	Weak transcription	Gastric	stomach
8	chr10:97884800-97889400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:97885000-97886000	Flanking Active TSS	K562	blood
10	chr10:97885000-97888800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:97885200-97889000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:97885200-97889000	Weak transcription	Placenta	Placenta
13	chr10:97885200-97889000	Weak transcription	NHEK	skin
14	chr10:97885200-97889200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:97885200-97889200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:97885200-97889400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr10:97885400-97886200	Enhancers	HepG2	liver
18	chr10:97885400-97888800	Weak transcription	Dnd41	blood
19	chr10:97885400-97889000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr10:97885400-97889000	Weak transcription	A549	lung
21	chr10:97885400-97889400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:97885600-97889000	Weak transcription	Hela-S3	cervix
23	chr10:97885800-97889000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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