Variant report

Variant	rs73320939
Chromosome Location	chr10:97925155-97925156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97889748..97891438-chr10:97923791..97925678,2	MCF-7	breast:
2	chr10:97910420..97912683-chr10:97924000..97927291,3	K562	blood:
3	chr10:97882072..97884554-chr10:97924471..97926244,2	MCF-7	breast:
4	chr10:97924295..97926346-chr10:97927012..97928959,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12098340	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1360954	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17111341	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17111359	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17111364	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56046295	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57904662	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60064761	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs60218681	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7081962	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7087254	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73320962	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7900016	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7902556	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7908971	0.80[AFR][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:97912400-97927800	Weak transcription	Fetal Brain Male	brain
3	chr10:97913000-97925400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:97914200-97925600	Weak transcription	Fetal Stomach	stomach
5	chr10:97914200-97925800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:97914200-97926200	Weak transcription	Pancreas	Pancrea
7	chr10:97917400-97928000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr10:97917600-97925200	Weak transcription	Fetal Brain Female	brain
9	chr10:97917600-97925800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:97918000-97925400	Weak transcription	Brain Hippocampus Middle	brain
11	chr10:97918200-97925400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr10:97918200-97925800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:97918200-97925800	Weak transcription	Osteobl	bone
14	chr10:97918200-97928000	Weak transcription	Thymus	Thymus
15	chr10:97918400-97930000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:97918600-97925400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:97918600-97925600	Weak transcription	NHEK	skin
18	chr10:97918600-97925800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr10:97918600-97926200	Weak transcription	Left Ventricle	heart
20	chr10:97918600-97926400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:97918800-97925800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:97918800-97926400	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr10:97918800-97926600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:97918800-97928000	Weak transcription	A549	lung
25	chr10:97918800-97929400	Weak transcription	HepG2	liver
26	chr10:97919000-97925400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:97919200-97925800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:97919400-97925400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr10:97919400-97927400	Weak transcription	HSMMtube	muscle
30	chr10:97919600-97926800	Weak transcription	Fetal Thymus	thymus
31	chr10:97919600-97927400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr10:97919600-97930000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:97919800-97925400	Weak transcription	Dnd41	blood
34	chr10:97919800-97927200	Weak transcription	Fetal Muscle Trunk	muscle
35	chr10:97920000-97925400	Weak transcription	Primary T cells from cord blood	blood
36	chr10:97920200-97926600	Weak transcription	Fetal Muscle Leg	muscle
37	chr10:97920400-97926600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:97921000-97930200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr10:97921200-97925200	Weak transcription	Fetal Lung	lung
40	chr10:97921200-97926600	Weak transcription	Primary B cells from cord blood	blood
41	chr10:97921400-97925800	Weak transcription	Placenta	Placenta
42	chr10:97921600-97925400	Weak transcription	Adipose Nuclei	Adipose
43	chr10:97921800-97926600	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr10:97921800-97927600	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr10:97922000-97927800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr10:97922200-97927600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr10:97923000-97925800	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr10:97923000-97927000	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr10:97923200-97925400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:97923200-97926400	Weak transcription	Liver	Liver

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