Variant report

Variant	rs60064761
Chromosome Location	chr10:97954104-97954105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr10:97953748-97954144	HL-60	blood:	n/a	chr10:97953934-97953948

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97801040..97803608-chr10:97952712..97954225,2	K562	blood:

Variant related genes	Relation type
NPM1P25	TF binding region
ENSG00000107443	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1360954	0.81[EUR][1000 genomes]
rs17111359	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17111391	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73320939	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73320962	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7908971	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97945600-97956200	Weak transcription	Brain Substantia Nigra	brain
2	chr10:97947400-97961800	Weak transcription	Pancreas	Pancrea
3	chr10:97948000-97963800	Weak transcription	Placenta	Placenta
4	chr10:97948200-97963600	Weak transcription	Gastric	stomach
5	chr10:97948200-97979000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:97948400-97957000	Weak transcription	Fetal Intestine Small	intestine
7	chr10:97948400-97974200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:97948600-97962800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:97948600-97969400	Weak transcription	Fetal Stomach	stomach
10	chr10:97948800-97959200	Weak transcription	Spleen	Spleen
11	chr10:97949600-97956600	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr10:97949600-97989200	Strong transcription	Liver	Liver
13	chr10:97950000-97969400	Weak transcription	Esophagus	oesophagus
14	chr10:97950600-97960600	Weak transcription	Small Intestine	intestine
15	chr10:97951800-97956000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:97952000-97954600	Weak transcription	Fetal Intestine Large	intestine
17	chr10:97952000-97955000	Strong transcription	Primary B cells from peripheral blood	blood
18	chr10:97952000-98010200	Weak transcription	Fetal Kidney	kidney
19	chr10:97952200-97971800	Strong transcription	Primary B cells from cord blood	blood
20	chr10:97953000-97956600	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr10:97953600-97955200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr10:97953600-97967000	Weak transcription	Colonic Mucosa	Colon
23	chr10:97953600-97967800	Strong transcription	GM12878-XiMat	blood

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