Variant report

Variant	rs17111391
Chromosome Location	chr10:97950486-97950487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12098340	0.85[YRI][hapmap]
rs1360954	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs17111341	1.00[CEU][hapmap]
rs17111359	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs17111364	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap]
rs60064761	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7079761	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7081962	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap]
rs7087254	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.87[TSI][hapmap]
rs73320962	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7908971	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs17111391	C1QB	trans	brain	seeQTL
rs17111391	NCF1	trans	brain	seeQTL
rs17111391	TREM2	trans	brain	seeQTL
rs17111391	RNASE2	trans	brain	seeQTL

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97945600-97956200	Weak transcription	Brain Substantia Nigra	brain
2	chr10:97947400-97961800	Weak transcription	Pancreas	Pancrea
3	chr10:97948000-97963800	Weak transcription	Placenta	Placenta
4	chr10:97948200-97963600	Weak transcription	Gastric	stomach
5	chr10:97948200-97979000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:97948400-97957000	Weak transcription	Fetal Intestine Small	intestine
7	chr10:97948400-97974200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:97948600-97962800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:97948600-97969400	Weak transcription	Fetal Stomach	stomach
10	chr10:97948800-97959200	Weak transcription	Spleen	Spleen
11	chr10:97949400-97952000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
12	chr10:97949600-97952200	ZNF genes & repeats	Primary B cells from cord blood	blood
13	chr10:97949600-97956600	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr10:97949600-97989200	Strong transcription	Liver	Liver
15	chr10:97949800-97952000	ZNF genes & repeats	Fetal Intestine Large	intestine
16	chr10:97949800-97953600	Strong transcription	Duodenum Mucosa	Duodenum
17	chr10:97949800-97953600	ZNF genes & repeats	GM12878-XiMat	blood
18	chr10:97950000-97952000	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr10:97950000-97969400	Weak transcription	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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