Variant report

Variant	rs17111359
Chromosome Location	chr10:97896012-97896013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97895152..97897058-chr10:97921011..97922846,2	K562	blood:
2	chr10:97887805..97893654-chr10:97893672..97904604,20	MCF-7	breast:
3	chr10:97802862..97805613-chr10:97893872..97896064,2	K562	blood:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction
ENSG00000107443	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12098340	0.86[YRI][hapmap];0.81[AMR][1000 genomes]
rs1360954	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17111341	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17111364	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17111391	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs56046295	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57904662	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60064761	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60218681	0.81[AMR][1000 genomes]
rs7079761	1.00[CEU][hapmap]
rs7081962	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7087254	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73320939	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73320962	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7900016	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7902556	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97890600-97911200	Weak transcription	Gastric	stomach
2	chr10:97890600-97911200	Weak transcription	Spleen	Spleen
3	chr10:97890600-97912800	Weak transcription	Esophagus	oesophagus
4	chr10:97890800-97912800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:97890800-97917200	Weak transcription	Small Intestine	intestine
6	chr10:97890800-97922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:97891000-97896400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr10:97891000-97896600	Weak transcription	Aorta	Aorta
9	chr10:97891000-97906400	Weak transcription	Right Ventricle	heart
10	chr10:97891000-97906600	Weak transcription	Psoas Muscle	Psoas
11	chr10:97891000-97913400	Weak transcription	Brain Germinal Matrix	brain
12	chr10:97891000-97914000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:97891200-97911000	Weak transcription	HSMMtube	muscle
15	chr10:97891200-97911400	Weak transcription	Fetal Brain Male	brain
16	chr10:97891400-97911000	Weak transcription	Brain Anterior Caudate	brain
17	chr10:97891400-97916400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr10:97891400-97918200	Weak transcription	NHLF	lung
19	chr10:97891600-97896400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:97891600-97896400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:97891600-97896600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr10:97891600-97911200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:97891600-97913400	Weak transcription	Fetal Heart	heart
24	chr10:97891800-97921400	Weak transcription	Stomach Mucosa	stomach
25	chr10:97892000-97896200	Weak transcription	Fetal Intestine Small	intestine
26	chr10:97892000-97912200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr10:97892400-97898600	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr10:97892400-97901400	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr10:97892400-97909600	Strong transcription	Primary B cells from peripheral blood	blood
30	chr10:97892400-97924800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:97892600-97896600	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr10:97892600-97898200	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr10:97892600-97907800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr10:97892600-97909800	Strong transcription	Liver	Liver
35	chr10:97892800-97896400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr10:97892800-97898400	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr10:97892800-97907800	Strong transcription	Duodenum Mucosa	Duodenum
38	chr10:97892800-97909400	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr10:97892800-97924200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr10:97893000-97897600	Strong transcription	Fetal Lung	lung
41	chr10:97893000-97897800	Strong transcription	Fetal Kidney	kidney
42	chr10:97893000-97898000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr10:97893000-97898000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:97893000-97898200	Strong transcription	Stomach Smooth Muscle	stomach
45	chr10:97893000-97898400	Strong transcription	K562	blood
46	chr10:97893000-97900000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr10:97893000-97902000	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr10:97893000-97903600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr10:97893000-97904000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr10:97893000-97904000	Strong transcription	Fetal Muscle Leg	muscle

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