Variant report

Variant	rs7081962
Chromosome Location	chr10:97919742-97919743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97914380..97917567-chr10:97919091..97921187,3	K562	blood:
2	chr10:97848882..97852463-chr10:97918917..97921781,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNJ-1	chr10:97917647-97920099	ENSG00000177853
2	lnc-CCNJ-1	chr10:97915954-97920099	ENSG00000177853

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1360954	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs17111341	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17111359	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17111364	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17111391	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap]
rs56046295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57904662	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7079761	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7087254	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73320939	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7900016	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7902556	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97890800-97922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:97891800-97921400	Weak transcription	Stomach Mucosa	stomach
4	chr10:97892400-97924800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:97892800-97924200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:97903200-97923000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr10:97903600-97920200	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:97910600-97919800	Strong transcription	Dnd41	blood
9	chr10:97910800-97920200	Strong transcription	Fetal Muscle Leg	muscle
10	chr10:97910800-97922200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr10:97911000-97919800	Strong transcription	Fetal Lung	lung
12	chr10:97911000-97919800	Strong transcription	Fetal Muscle Trunk	muscle
13	chr10:97911000-97920000	Strong transcription	Placenta	Placenta
14	chr10:97911000-97920400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:97911000-97921000	Strong transcription	Rectal Mucosa Donor 31	rectum
16	chr10:97911000-97921200	Strong transcription	Primary B cells from cord blood	blood
17	chr10:97911000-97921800	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr10:97911000-97921800	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr10:97911000-97921800	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr10:97911000-97922000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr10:97911000-97923000	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:97911200-97919800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:97912400-97920800	Weak transcription	Right Ventricle	heart
24	chr10:97912400-97927800	Weak transcription	Fetal Brain Male	brain
25	chr10:97913000-97920200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr10:97913000-97925400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:97913200-97920600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:97914200-97924800	Weak transcription	Fetal Intestine Small	intestine
29	chr10:97914200-97925600	Weak transcription	Fetal Stomach	stomach
30	chr10:97914200-97925800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr10:97914200-97926200	Weak transcription	Pancreas	Pancrea
32	chr10:97914600-97921800	Weak transcription	Brain Germinal Matrix	brain
33	chr10:97915000-97920400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr10:97915400-97923200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr10:97915400-97923400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:97916200-97921000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
37	chr10:97916400-97920400	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr10:97917000-97920600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr10:97917200-97922200	Weak transcription	Colon Smooth Muscle	Colon
40	chr10:97917400-97920600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr10:97917400-97921600	Weak transcription	Colonic Mucosa	Colon
42	chr10:97917400-97922800	Weak transcription	Fetal Heart	heart
43	chr10:97917400-97923000	Weak transcription	Rectal Smooth Muscle	rectum
44	chr10:97917400-97928000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr10:97917600-97920800	Weak transcription	Brain Anterior Caudate	brain
46	chr10:97917600-97922600	Weak transcription	Ovary	ovary
47	chr10:97917600-97924800	Weak transcription	Small Intestine	intestine
48	chr10:97917600-97925200	Weak transcription	Fetal Brain Female	brain
49	chr10:97917600-97925800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr10:97917800-97920800	Weak transcription	Brain Cingulate Gyrus	brain

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