Variant report

Variant	rs57958908
Chromosome Location	chr9:104329302-104329303
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:104211411..104211984-chr9:104329284..104330026,2	MCF-7	breast:
2	chr9:104210438..104213268-chr9:104328768..104330503,2	K562	blood:
3	chr9:104221444..104221955-chr9:104329285..104330133,2	K562	blood:

Variant related genes	Relation type
ENSG00000270982	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs58719526	1.00[AFR][1000 genomes]
rs58723462	1.00[AFR][1000 genomes]
rs59346028	1.00[AFR][1000 genomes]
rs59775931	1.00[AFR][1000 genomes]
rs60076240	0.95[AFR][1000 genomes]
rs60850343	0.83[AFR][1000 genomes]
rs73501295	0.83[AFR][1000 genomes]
rs73501298	0.83[AFR][1000 genomes]
rs73501301	0.83[AFR][1000 genomes]
rs73503226	0.95[AFR][1000 genomes]
rs73503231	0.95[AFR][1000 genomes]
rs73503239	1.00[AFR][1000 genomes]
rs73503242	1.00[AFR][1000 genomes]
rs73503247	1.00[AFR][1000 genomes]
rs73503252	1.00[AFR][1000 genomes]
rs73503255	1.00[AFR][1000 genomes]
rs73503262	1.00[AFR][1000 genomes]
rs73505278	1.00[AFR][1000 genomes]
rs73505281	1.00[AFR][1000 genomes]
rs73505301	1.00[AFR][1000 genomes]
rs73509320	1.00[AFR][1000 genomes]
rs73509326	0.87[AFR][1000 genomes]
rs73509329	0.95[AFR][1000 genomes]
rs73509336	1.00[AFR][1000 genomes]
rs73509395	1.00[AFR][1000 genomes]
rs73659520	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1052492	chr9:104263419-104387782	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv893627	chr9:104268342-104334333	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv831672	chr9:104300755-104480849	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104296800-104334200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:104296800-104337400	Weak transcription	Stomach Mucosa	stomach
3	chr9:104297600-104330400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:104297600-104330400	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:104297800-104332600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr9:104297800-104333000	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr9:104298000-104332800	Strong transcription	Primary B cells from peripheral blood	blood
8	chr9:104298200-104333200	Strong transcription	Adipose Nuclei	Adipose
9	chr9:104298400-104333200	Strong transcription	Liver	Liver
10	chr9:104298400-104333400	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr9:104299000-104333000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:104299200-104330400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:104301600-104333400	Strong transcription	Duodenum Smooth Muscle	Duodenum
14	chr9:104301800-104331800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:104302200-104333000	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr9:104306000-104329400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:104311800-104332400	Strong transcription	Fetal Intestine Large	intestine
18	chr9:104313200-104335400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:104315000-104334600	Weak transcription	Small Intestine	intestine
20	chr9:104318200-104333400	Strong transcription	Primary B cells from cord blood	blood
21	chr9:104319400-104330600	Strong transcription	Brain Inferior Temporal Lobe	brain
22	chr9:104319600-104330800	Strong transcription	Brain Anterior Caudate	brain
23	chr9:104319600-104330800	Strong transcription	Fetal Muscle Trunk	muscle
24	chr9:104319600-104330800	Strong transcription	Fetal Muscle Leg	muscle
25	chr9:104319600-104333000	Strong transcription	Stomach Smooth Muscle	stomach
26	chr9:104320600-104332600	Weak transcription	HMEC	breast
27	chr9:104320600-104333200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr9:104320800-104331600	Weak transcription	Fetal Heart	heart
29	chr9:104321800-104331000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr9:104322200-104330600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr9:104322200-104332200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr9:104322600-104330600	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr9:104322600-104333000	Strong transcription	A549	lung
34	chr9:104323000-104329400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr9:104323000-104330400	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr9:104323000-104332800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr9:104323200-104330800	Strong transcription	Fetal Brain Female	brain
38	chr9:104323600-104334800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr9:104323800-104329800	Strong transcription	Primary T cells from cord blood	blood
40	chr9:104324000-104332800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr9:104324200-104332800	Strong transcription	Brain Cingulate Gyrus	brain
42	chr9:104324400-104330200	Strong transcription	Colonic Mucosa	Colon
43	chr9:104324800-104329800	Weak transcription	Hela-S3	cervix
44	chr9:104324800-104334800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr9:104324800-104334800	Weak transcription	Right Ventricle	heart
46	chr9:104325000-104329400	Weak transcription	Fetal Kidney	kidney
47	chr9:104325000-104330400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr9:104325000-104331400	Weak transcription	K562	blood
49	chr9:104325000-104333200	Weak transcription	NHDF-Ad	bronchial
50	chr9:104325000-104334000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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